XLOC_031192 (ntmt1)


Basic Information

Item Value
gene id XLOC_031192
gene name ntmt1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32499070 ~ 32505280 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060578
ATGAGCGATTGCAAGAAGCGGCAGTCAGCGAGAGCACGAAAGCAAAGGAGTTGCACAAAGATGGAAGACTGTTTGATAGAAGACCAAACGTCCTTTTACTCAAAGGCAGAGCACTACTGGAAGGACGTCCCGCCCACTGTGGATGGAATGCTGGGAGGTTATGGCAGCATCTCCAGTATTGACATTAACGGCTCAAAAAAGTTTCTTCAGAAATTCCTTGGGGAAGGCCAGGGTAAGACTGGCACAGGTTGTGCTCTGGACTGTGGCGCTGGGATTGGCAGGATCACCAAGCGGCTGCTCCTGCCACTCTTTCGAACAGTAGATCTTGTGGACGTGACTCAGGAATTCCTGGATAAAGCTCGTACATACCTGGGTGAGGAGAGCAAACGGGTGGAGAACTACTTCTGCTGTGGCCTGCAAGACTTTCAGCCCCAGCCAGAGCGATACGATGTCATATGGATCCAGTGGGTGATTGGTCACTTGACTGACGATCACCTAGTGAAGTTCCTAAGACGCTGCCGGAGCGGTCTGCGTCCTGAAGGCCTGATCGTGGTGAAGGATAACGTTGCGTATGAGGGTGTTATCCCTGATGACGTGGACAGCAGCGTCTGCCGGGACCTGAATGTGCTGCACCGTCTTGTAGCCAGAGCTGGACTCAGCATCATCTATGAGGAGCAGCAGAAGAACTTCCCTGAGGAGATCTATCAGGTCCACGCACTTGCACTCAGATAGCTGATGCCATTCGGCAAGTACTTTTATTATCCATCTGTATTGAAACCAATTATGAGAAAGGGAAACTAGGATCAATAAAGCCACACAGGAGCTACTTGTTACTGCCATTGTGGTCATTTTTGTGAAGGCGCAAGACTTGAAAATGGGTTTTATGTATGGGAGTCTGAAAGGTTCTTATTAACCTTTAAAGTTTGTATTATGACAGCTGGAGCTGAGCTTGTGGTTGTCATCAATATGAATGCAGAAATTGTGACTGTTAGCTTTTCTGAGAAGTGAACTGCTTACACTCCAGCTGATCTCCCATTTGAAGTCTTCTGTTAGTCTCAGCAGGGTTTCATCACAGTGGAAGATAAAAACAATCAGGACAAAAAtgtaaaccacacacacacacacacactgcttcacATTTAGCAGTGGATGTGCCGAGAacagggatagttcatccaaaaatgatttgtttttttcatgATCATATCATGACTGACTTGTGATGAAAATAATACTTGAGAAATCTATTTAATGGTCAGTATGTCAGTTACCAACATTATTAAAGGAAcattctcatttaaaaaaaaaggctcaGGGTtttagttgagttttaccatttttttaatccattcagctgaacTCTGAAACTGGCAGGAGctttttttagcttagcttagcatagatcattgaatcagattagaccattagcttctTGCTAAAATTTCTAATTTTCCTATTTATAGATTGACTCTTCTGAAATTCCATCATGTAGTttagactgacagaaaatgagaAGTTGCTGCTTTCTTGTtcaatatggctaggaactattctctcattctggcgtaataatcaaggaactttgctgcagtACCATGGCTAGTACATTTGGGATATTTTGTGAATTCTAAATGGTGGTACAAGTGTAGGGCTTCATTATGAGGACTATTTTCAGACACTctagattcaaaaatggtaaaactcaactgtttaactttaaaAATGAGCCTGTAAAATGGTGTAAAAGGATTCCTTTCAAAATGACTTCTAAATGAAGTGAAAGACACAAGTTTGAAAAATTGTGACGAGTAAATTATCCTGAGGTAAACTATCCGTTTTATATCTGATTAATTGGAGTTTAGGCATGTCTGTTGCACTGAATGCTGTGTGAAAACTTTTTAATAACTTATGAAAACTTGAATGTTTTAGTATGTGTGAATTTACAGCTGTTGACAGAAAACTCTCAAGTGAACCATATATTGTATTTTGCCTTGAATAAACCAATATTTTGAAGC
>TCONS_00060579
aaacaggacaagacaccTTCAAAGACAGGAGGACCACGTGTAGGAGCGTGTTTGACCGAGTAAATCTAGAGTTGCACAAAGATGGAAGACTGTTTGATAGAAGACCAAACGTCCTTTTACTCAAAGGCAGAGCACTACTGGAAGGACGTCCCGCCCACTGTGGATGGAATGCTGGGAGGTTATGGCAGCATCTCCAGTATTGACATTAACGGCTCAAAAAAGTTTCTTCAGAAATTCCTTGGGGAAGGCCAGGGTAAGACTGGCACAGGTTGTGCTCTGGACTGTGGCGCTGGGATTGGCAGGATCACCAAGCGGCTGCTCCTGCCACTCTTTCGAACAGTAGATCTTGTGGACGTGACTCAGGAATTCCTGGATAAAGCTCGTACATACCTGGGTGAGGAGAGCAAACGGGTGGAGAACTACTTCTGCTGTGGCCTGCAAGACTTTCAGCCCCAGCCAGAGCGATACGATGTCATATGGATCCAGTGGGTGATTGGTCACTTGACTGACGATCACCTAGTGAAGTTCCTAAGACGCTGCCGGAGCGGTCTGCGTCCTGAAGGCCTGATCGTGGTGAAGGATAACGTTGCGTATGAGGGTGTTATCCCTGATGACGTGGACAGCAGCGTCTGCCGGGACCTGAATGTGCTGCACCGTCTTGTAGCCAGAGCTGGACTCAGCATCATCTATGAGGAGCAGCAGAAGAACTTCCCTGAGGAGATCTATCAGGTCCACGCACTTGCACTCAGATAG

Function

symbol description
ntmt1 Predicted to enable N-terminal protein N-methyltransferase activity and histone methyltransferase activity. Predicted to be involved in chromosome segregation; protein methylation; and spindle organization. Predicted to act upstream of or within methylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including lens placode; muscle; optic vesicle; paraxial mesoderm; and presumptive neural retina. Orthologous to human NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1).

GO:

id name namespace
GO:0035572 N-terminal peptidyl-serine dimethylation biological_process
GO:0035573 N-terminal peptidyl-serine trimethylation biological_process
GO:0007051 spindle organization biological_process
GO:0006480 N-terminal protein amino acid methylation biological_process
GO:0007059 chromosome segregation biological_process
GO:0018013 N-terminal peptidyl-glycine methylation biological_process
GO:0018016 N-terminal peptidyl-proline dimethylation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0071885 N-terminal protein N-methyltransferase activity molecular_function
GO:0008276 protein methyltransferase activity molecular_function
GO:0042054 histone methyltransferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2055 Predicted to enable N-terminal protein N-methyltransferase activity and histone methyltransferase activity. Predicted to be involved in chromosome segregation; protein methylation; and spindle organization. Predicted to act upstream of or within methylation. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Is expressed in several structures, including lens placode; muscle; optic vesicle; paraxial mesoderm; and presumptive neural retina. Orthologous to human NTMT1 (N-terminal Xaa-Pro-Lys N-methyltransferase 1).

Ensembl:

ensembl_id ENSDARG00000022399

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060578 False 2015 mRNA 0.41 4 32499070 32505280
TCONS_00060579 True 753 mRNA 0.52 4 32500353 32505109

Neighbor

gene id symbol gene type direction distance location
XLOC_031191 gpr107 coding downstream 9274 32460453 ~ 32489796 (-)
XLOC_031190 ncs1a coding downstream 53235 32402026 ~ 32445835 (-)
XLOC_031189 fbxw2 coding downstream 102141 32380026 ~ 32396929 (-)
XLOC_031188 gas1b coding downstream 135698 32360336 ~ 32363372 (-)
XLOC_031187 NA coding downstream 142068 32342243 ~ 32357002 (-)
XLOC_031193 NA coding upstream 11391 32516671 ~ 32536749 (-)
XLOC_031194 NA coding upstream 55300 32560580 ~ 32737158 (-)
XLOC_031195 NA coding upstream 277387 32782667 ~ 32784800 (-)
XLOC_031196 ptpa coding upstream 288606 32793886 ~ 32814417 (-)
XLOC_031197 lrsam1 coding upstream 360084 32865364 ~ 32882162 (-)
XLOC_031181 BX004981.3 non-coding downstream 328784 32170170 ~ 32170286 (-)
XLOC_031179 NA non-coding downstream 362649 32135202 ~ 32136421 (-)
XLOC_031178 BX004981.1 non-coding downstream 366840 32129482 ~ 32132230 (-)
XLOC_031177 NA non-coding downstream 395744 32101284 ~ 32103326 (-)
XLOC_031198 NA non-coding upstream 379899 32885179 ~ 32885874 (-)
XLOC_031200 NA non-coding upstream 417376 32922656 ~ 32927919 (-)

Expression


Co-expression Network