G1209572


Basic Information

Item Value
gene id G1209572
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 6752864 ~ 6756811 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1381315
CCAGTATACCGTCGAAATGTTGTCGCGCAGAGAATAGGTTGATAGGATGACGTCTTTATATATTTTCATGACATGATTTATGTGCCATAGCCTACATGCATCGATAAGAACTACACACATACGTTCATGCACGCATAAAATGTAAATGCGTTAGTCACACCATGCCATAAGAATTACGCTGTAAAAACATGTCCAGAGATTCTCCCTGTGTAAACATTCCACTGAAGTTTACATAGCTTCATGCTCGATTGCTCTTCCTGGCTACTTCATCATGTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTAT
>TU1381318
ACATGCATCGATAAGAACTACACACATACGTTCATGCACGCATAAAATGTAAATGCGTTAGTCACACCATGCCATAAGAATTACGCTGTAAAAACATGTCCAGAGATTCTCCCTGTGTAAACATTCCACTGAAGTTTACATAGCTTCATGCTCGATTGCTCTTCCTGGCTACTTCATCATGTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGCACATCCACAACCCCTTCTGCTGGAGAATGACATGTCATCCCTACATGCCAGTGTGGAGCTCCCttgtttcccctccctccccagggCCTGAGGGTGCCCCTGCCCTCTGTCTGCTACTGGAGGAGGACCAGGAACCACTGGAGTCTCATACACAGATTGAGCCAAAGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTAT
>TU1381313
GTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTATTAAACAAATACCATTTATGTCAGACTAGCCTGATCTCTACAAGACTGTGCGACAAGTAGAGGATCCCGCACATGCACAGAAGTCGTGAAGAGGGctcgacaaaacctattccccctcaggagactaaaaagatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcgagagcatcctgactggttgcatcactgcctggtatggcaactgttcggcctctgaccgcaaggcactacagagggtagtgcgtacggcccattacatcactggggccgcactcctgaacatctaatcaaatggctacccagactatttgcatcgaGGAGAGGCGGAGCCAAGATCAGCTGAGGGCGGAGCTAAACAACCTGCAGCTGGGGTTATGCTCAGGTCAAGGATCTCAAGGACCCATGACTCCTCACCACTCAAACAACAGTGAATTAAAGTGTTACTGTCTCC
>TU1381316
GTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGGTgagatatgcacacacacacatccacacataaacacacttgTTTATTGGGAGAGGAGATGTTACTCTCATTGTGAAGAGCtctattatgtgtgtgtgtgtgtgtgtgcaatgccCGTGTAGTGTGTTACATAGTGTCTAGACTCTAGGGTGTAGTAGTTATGTAATTAGATGTGGTCTAAGATGATTGCTGTTGGTGGTTGTTGTCAGGAGGACTCTTGGGAGGCTCTTGGGAGGCCCTCACAGGTCTGTATTTGTGTacgtgtctgcgtgtgtgtgtacgtatgttcctgtgtgtgtgcacatgtgcatGCGAAGGGGTGGTACATATGCATAATCGTTCTCtgcaagtgttttttttttgtaagctGATGCAATAGCAGTGTTTCACCAGTAAGTGGCTGTATAGGGTTCAAGTCAGTTGTGTTCTCTTTTCATAGTGCTGTTGAGAATGCTTATTGTGTTCTATATTTTTTTAagctttgtgtgtgtttctgcccaGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTAT
>TU1381317
GTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGCACATCCACAACCCCTTCTGCTGGAGAATGACATGTCATCCCTACATGCCAGTGTGGAGCTCCCttgtttcccctccctccccagggCCTGAGGGTGCCCCTGCCCTCTGTCTGCTACTGGAGGAGGACCAGGAACCACTGGAGTCTCATACACAGATTGAGCCAAAGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTATTAAACAAATACCATTTATGTCAGACTAGCCTGATCTCTACAAGACTGTGCGACAAGTAGAGGATCCCGCACATGCACAGAAGTCGTGAAGAGGGctcgacaaaacctattccccctcaggagactaaaaagatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcgagagcatcctgactggttgcatcactgcctggtatggcaactgttcggcctctgaccgcaaggcactacagagggtagtgcgtacggcccattacatcactggggccgcactcctgaacatctaatcaaatggctacccagactatttgcatcgaGGAGAGGCGGAGCCAAGATCAGCTGAGGGCGGAGCTAAACAACCTGCAGCTGGGGTTATGCTCAGGTCAAGGATCTCAAGGACCCATGACTCCTCACCACTCAAACAACAGTGAATTAAAGTGTTACTGTCTCC
>TU1381321
GTGGCTGTCTCCTTGTTGGCAGGGAATTGCCAATGTCCGAGCCTTGAGCTGATGCTGAGCCCGGCGACAATCACCGAGGTCTCTCGTATCGTCTACCCCGGGTTCGCTTTCGTCCCGGTGCCCACCTCGGCCGCCGCGACATTGCACCTGGCGCTGGGCTAGCAGGTGATTCCGGGAACACCTCCACGTGTCGCCTTCGCCTGTCACCTTGTCCTTCCAGAATGTGGACAGTCATTAGAGAAATGTATGCGTGTCCTACCTGGGTCAGTTCATCTCAGAGGCAGGGATTGAACTGCAGTCAGATGCACATCCACAACCCCTTCTGCTGGAGAATGACATGTCATCCCTACATGCCAGTGTGGAGCTCCCttgtttcccctccctccccagggCCTGAGGGTGCCCCTGCCCTCTGTCTGCTACTGGAGGAGGACCAGGAACCACTGGAGTCTCATACACAGATTGAGCCAAAGAAACGTAAAGGTGGATGGCCAAAGGGAAAGAAGAGGCAACCTCAGAGAGAGTTAACTGCCCCCAGAGTTCCAACAACAGGAGGAGTTTGAGAAGGACAGAGGCAGCCGGCAGCAGGCTCCAGGGATGGAGAGAAGCCCTgtgggtgaggaagaggaggcagagTTGGCTCGTACGTTTGGTCTGTCCTCGCTGGACATCAGTGCGCTGCAGGAGCTGCTGCTCAGACACATACTGACCAGCACTTTGGATCTATAGCTAACCTCCCCGTCCTGTCTGCCTGGATCTGTTTTCCCCAGAGCTGAAGAGCCGAATCACGTTCTGCGCATGTTTCCTTACCTAAATGTAGATCTTCTTGAGTtatacagtgttgttttgaatTATGGACAGTGAGCGAACTTTAGAGCAGTTGGTGGAAACAATCTGTCGCATAGTCTACCTGTGTTTAGTTTCTATCACAGCACATATTTTGCCTAGTGGCGCAGGCTATTGAGTTTTTGCCAAAAATGTGACCATTTGCACAAACATCTTAAAGTTCTTAAGAAATTTGATTGTTTTCTGTCTTACAGTAACCTTATACTATTATGTTTGGTTATGTTACATGGAATCAATAAGTGATCTtgcagacattgattcagctttgatatAACTTTATTAAACAAATACCATTTATGTCAGACTAGCCTGATCTCTACAAGACTGTGCGACAAGTAGAGGATCCCGCACATGCACAGAAGTCGTGAAGAGGGctcgacaaaacctattccccctcaggagactaaaaagatttggcatgggtcctcagatcctcaaaaggttctacagctgcaccatcgagagcatcctgactggttgcatcactgcctggtatggcaactgttcggcctctgaccgcaaggcactacagagggtagtgcgtacggcccattacatcactggggccgcactcctgaacatctaatcaaatggctacccagactatttgcatcgaGGAGAGGCGGAGCCAAGATCAGCTGAGGGCGGAGCTAA

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1381315 False 1231 lncRNA 0.47 4 6752864 6756341
TU1381318 False 1306 TUCP 0.49 5 6752957 6756341
TU1381313 False 1428 lncRNA 0.50 4 6753137 6756811
TU1381316 False 1459 lncRNA 0.47 3 6753137 6756341
TU1381317 False 1596 TUCP 0.51 5 6753137 6756811
TU1381321 True 1500 TUCP 0.51 5 6753137 6756715

Neighbor

gene id symbol gene type direction distance location
LOC110487700 LOC106604865 coding upstream 11942 6718527 ~ 6740922 (+)
LOC110488643 LOC106604862 coding upstream 41726 6707877 ~ 6711138 (+)
LOC110488638 LOC106604859 coding upstream 49666 6699386 ~ 6703198 (+)
LOC110488640 LOC106604860 coding upstream 53892 6688174 ~ 6698972 (+)
LOC110488641 LOC106604858 coding upstream 64822 6685129 ~ 6688042 (+)
LOC110488646 LOC106604864 coding downstream 8353 6765164 ~ 6810082 (+)
LOC110488650 LOC106611908 coding downstream 88409 6845220 ~ 6886525 (+)
dock2 LOC106604826 coding downstream 176249 6933060 ~ 6937910 (+)
LOC110488657 LOC106604826 coding downstream 183599 6940410 ~ 7081993 (+)
LOC118938692 LOC106611811 coding downstream 326372 7083183 ~ 7087463 (+)
G1209621 NA non-coding upstream 2549 6750096 ~ 6750315 (+)
G1209619 NA non-coding upstream 3815 6748780 ~ 6749049 (+)
G1209618 LOC106604863 non-coding upstream 5381 6746812 ~ 6747483 (+)
G1209617 NA non-coding upstream 6343 6746293 ~ 6746521 (+)
G1209616 NA non-coding upstream 7246 6744952 ~ 6745618 (+)
G1209573 NA non-coding downstream 54282 6811093 ~ 6811587 (+)
G1209639 NA non-coding downstream 55260 6812071 ~ 6812426 (+)
G1209645 NA non-coding downstream 59513 6816324 ~ 6816563 (+)
G1209648 NA non-coding downstream 63327 6820138 ~ 6820433 (+)
G1209649 NA non-coding downstream 63716 6820527 ~ 6820766 (+)
G1209622 NA other upstream 1150 6751352 ~ 6751714 (+)
G1209615 LOC106604863 other upstream 8074 6743934 ~ 6744790 (+)
G1208884 NA other upstream 845095 5903921 ~ 5907769 (+)
G1207553 NA other upstream 1830304 4922141 ~ 4922560 (+)
LOC110488581 LOC106611927 other upstream 2358824 4327546 ~ 4477610 (+)
LOC110488661 diaph1 other downstream 562209 7251365 ~ 7385487 (+)
G1210502 NA other downstream 675566 7432377 ~ 7435168 (+)
G1210520 LOC106604879 other downstream 703037 7459848 ~ 7481225 (+)
G1210695 NA other downstream 1054320 7811131 ~ 7811872 (+)
G1210708 LOC106604831 other downstream 1072012 7828823 ~ 7836843 (+)

Expression


Co-expression Network