XLOC_031194


Basic Information

Item Value
gene id XLOC_031194
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32560580 ~ 32737158 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062034
GTGACTAATAAAAATCAACCGACAGCTCTGAATGCAGTTAGCTGAATTTGAAGGGATCTAGTTGAACCACAAAAAGGACGGAAGCATCTAAAGTGGATGATTAGATCTGAAACGCTCggaagacacacacaaacacactaaagaTTCTGTAAGTTACCAAACTAAAACGAGCTAACGTTACACATGACGCGCGTGTAAACGACTCCCTCACCAACACAAAGCAAGCTCTGTGATGTGAATATATTATAAGACCAGCTCAGATTTCACGAAAATATGGCGctgagtccctgtattaatccggggttgccacagtggaatgaaccgccaacttatccagcacgttttataccacgtctttggactattggggaaaccggagcacccgaaggaaacccacgtgaacacagggagaacatgaaactccacacagaaacgcctactgtcccagccaaggctcgaaccagcgaccttcatgctgtgaggaaacagcactacctgctgcgccactgcgttgccctccATTAAGGAGTCTGAAATCACAAGCCATGTGCTGTAAAGGAGCTGTTCTCACACATGTGTCTTCAGACAAGAAAGAGAACGACAACAGGTCTCCACAGATATGGTGCTTGTGTCGATGCTGTTGCTCAGCCTGGAAAAATGGTCCATGTTTCTTCTGATTGGAGGCTCTGGGAAAAGAAGGAAGTCATAGAGAGAGCAGAAGGAGAGAGCATTCTTTGCAGCTGAAGTCACCCTGTCTGTGGCTATGGGAGAGCAGtgctgtccacacacacacacacacacacacacacagccgtcTCTGTGTGTCAGTGTCGGTTTGAGTGGGTGGGAGTACACCACTGCAGGGGTTTTGGGTTGAGACacaaccagagagagagagatggtgaGAGCGAGAGAGTAGTAAGAGAGGATGGATAGAAAGAGACACACAAATAAGAGAAACATGAGAGATAGAGGCAGAGAAAGAGACAGTAAAACAAGTACAGGTGAGAAGACTGAAAATAGATAGAGGTGGAGGAGAGAGAGGTACAGTAAAGCCAGACAGATAGAAGAGTTTTTACAACTAGAGAAATGGAGATAAGGTATACTGCATAAATGAGTTTGATAAACGGGAAAGTAGAATAGGAAGTGTAATGTATGTACTGAGATATGTACTGTATGATGCCGCCTCATTACTGACATGAAGATATGTATTTTTATTGAGTTTTTGTTCAGAAACAGCTCtgcttttaaagaaaagttttattctttatctAGAAATTAAACTGATTTCTGTCATAATGTATCCACCCTGATGTTATTACAAAATAGTATGATTCGTTCTTGGAAAcccgaaagaagatattttgaagaatgtgtcATAAAAATGAAGTTATTGTGTCCAAAGCATTGAAGTCATCCACTGATTGTGAATGTatgttaattcattttcattttggatcTGGATACTGGAAAGTCTACATTCTTCCTAAGGAGAAGACAGAAGCCGAATGCTGGGTTCACGTCAAATATAAACTTTAGTATTAGTAGTAATTAGTAGTTAGTAGTTTAGTAGTAATTTAGTATAGTCAATGCAAATTAACAGTGCACATGACATGGTGTTTGCCAAAGATGTGCTGTATTCGCCTCAATTGGGTCTTCCACACAACTGTAAATAATTCAACTAATTCAGATGGAATATTTGTGTgaaaaacatcctgtgagtaaaCTAGAGCAAGTGATGCAATGCATATGCTCTATTTGCGCTTGATGTAGTCTAGAagtatttcaaaatattataatttattgctataatattgttatatttaatattatatataaaaaatctataatataacGTAAGCACCCAATCTTGAGCCCAGCATGGTTGATAGATACTATAAATTGGATTTGCTTTCCATCTAAGAATTCTATATGTTTAGTTCTGATGTGTCGTTCTGATTGGTTAAAGTTCTGTTAAATTCGGAAATGATTTAAAACTTTGAATGATGTAAATGCATTTTGAAGTATTGTCTTTTATTAACGAAagtacttattcatttattttcatcattcattcattttctttttggcttattccctttattaatatggggtcgccacagcgaaatgaaccacctgCAAATACTTAaagaattattaaaacaaatgattACAAACCAAAACCGGAATCCAATCGAAATCAGAAACATAACTGTTATATTTCTTTGTAACTTCCTTCTCCTGTGAGGACTGATATATTATTATGCTAGCACTGAACTCCCAGACTGAattacagaaaacaaaaacagtaaaaccATGGGTGAAAACGTGACCTTGATGCTTATTTGGTCATTCCACAGGATTTTTTTGTATGATATGATTGACCAGATAAAATAGACaggtgtataataaaataatcatttagcTAAAATTGTCTATGTAAAAACTAcaattatttgtatgtttttaacaGATATGGGTAGAGATAGACATGAATTATTTGTGAAATGAGAGTGGCACG
>TCONS_00062035
GACTAATAAAAATCAACCGACAGCTCTGAATGCAGTTAGCTGAATTTGAAGGGATCTAGTTGAACCACAAAAAGGACGGAAGCATCTAAAGTGGATGATTAGATCTGAAACGCTCggaagacacacacaaacacactaaagaTTCTGAGTCTGAAATCACAAGCCATGTGCTGTAAAGGAGCTGTTCTCACACATGTGTCTTCAGACAAGAAAGAGAACGACAACAGGTCTCCACAGATATGGTGCTTGTGTCGATGCTGTTGCTCAGCCTGGAAAAATGGTCCATGTTTCTTCTGATTGGctctgcttcagttgcttggcGCGGGTGAAGAAGTGCTccggtgagcaccagcacacacatattatgtacatctccaCATGCGACACACCATCaaatgttttcatcgaagttgttcataAAAG
>TCONS_00060580
CACAAAAAGGACGGAAGCATCTAAAGTGGATGATTAGATCTGAAACGCTCggaagacacacacaaacacactaaagaTTCTGAGTCTGAAATCACAAGCCATGTGCTGTAAAGGAGCTGTTCTCACACATGTGTCTTCAGACAAGAAAGAGAACGACAACAGGTCTCCACAGCTGCCACCTCTCCGGCAACAACACCCCCGACAACAAGCACACACCCACCTACCCCCACCCCGAGCGTCTCTTTGTGCCCGGCTAGAGGCTCTCCTTTCCAGCCACGCTTGCCTTTTGTTCCCTCTCGGTCCTCCCTCCTCTGGTTCTCCTCGGCGAGAAGCAGACGGCTGGTTGTGTTTGGGACTCAGctgaacaaacacacaccagGTCTGAGCAGGATGAGAAGGGGGAGGAGAACACACCTGACACCTCCACATCCTCCATGGTCTCCCTTGTAAAAGTGGTCTGTTGTTCAGCGAGTTGTGTTTGTTGAGTTGTTTACCTTGTTGTGTTTGGGTGGAAATGTCTTGTTTTGCATGTAATGTAGGTATCTTCTAAATGGTCTCTAGGGGTGTAACGGTATACAAAAATGATCAATTAATGTGGAGCTCTGTTTTAAAGTCAAGGTTTGGTTTcgaaacaacaaatattttacatttgttctCACTGAATAAACTATGCATGTCTTTATGTAGTCTATAAATGTTGAGTTTACAACAACAAACTTAACAAAGTTTGCAAAACACTATCTACATGGGACACTCTGCATAATAAAACTTAGAGGACAGTGTTAAACTGAATATAATTGGTGCTATTAAACATTGTCCAGTTTGTGACTGGTAACAAACAGAAACATGGATGTAGATGATGTTTTTTGGTGCTATATTTTTGTTTGAAGAAACAACACACAATATTCTGACTACACAGTGAAAATGGTGAAAATGTCAGCCCATGAGGTTAGTCTAGCACCAATATATCCACCAGCACATTCAGAAGCTCTACAGAAATGTGCGTGATTGGTTGTATGGCCCGCGCTGCAAAGAAATTCATTGAAGATCTTAACTTTAAAGCAACATGTTCAAATCTCAAATGAAATGTAACCCATTGacactgtttattattttaaagtttaatttaattgtttgttttagtttagttggGCATTTGTTTGCCTCATATGTTCTGACCCTAGTTTTATTTTGTCATATTGCTCTTTAGTTTGTAAGATTGgccaaaatattttgactacTGATAGAGTCATAAAATGGGATTAATGGTTGaagtcaaattttattttgatggtctgtttgttgaatttaggctACATTGcacctacatgccaactaattctcattagattatgagttgactgttaggttggggttagggttaaggttggggttagggttagtgtaagttgacatgtacttgcaaagtttcttatagtcagttcaatgtctgttgaaagaacagtatcaacagatattaagcagacagtctactcaaatggaccatcaaaataaagtgttaccttggtCGATATTGATCTGCCATTATTTATTGGAACATTCCTGATTTAAAAGTAAGTATCTACCTTGGTTTCATTATGGAATAAACAGTTTTCTATGAATTACAACATATTCAACTAACTGCTATTGACCTTAATCTTCACGTACGTTGAATCACGAAttgttctatttttatttttttgttgtttatttaatggggacaatacacttgacgtTGCTATACATGCTATACAGAGCCACAAACAGAAA
>TCONS_00062036
GACTAATAAAAATCAACCGACAGCTCTGAATGCAGTTAGCTGAATTTGAAGGGATCTAGTTGAACCACAAAAAGGACGGAAGCATCTAAAGTGGATGATTAGATCTGAAACGCTCggaagacacacacaaacacactaaagaTTCTGTAAGTTACCAAACTAAAACGAGCTAACGTTACACATGACGCGCGTGTAAACGACTCCCTCACCAACACAAAGCAAGCTCTGTGATGTGAATATATTATAAGACCAGCTCAGATTTCACGAAAATATGGCGGAGTCTGAAATCACAAGCCATGTGCTGTAAAGGAGCTGTTCTCACACATGTGTCTTCAGACAAGAAAGAGAACGACAACAGGTCTCCACAGCTGCCACCTCTCCGGCAACAACACCCCCGACAACAAGCACACACCCACCTACCCCCACCCCGAGCGTCTCTTTGTGCCCGGCTAGAGGCTCTCCTTTCCAGCCACGCTTGCCTTTTGTTCCCTCTCGGTCCTCCCTCCTCTGGTTCTCCTCGGCGAGAAGCAGACGGCTGGTTGTGTTTGGGACTCAGctgaacaaacacacaccagGTCTGAGCAGGATGAGAAGGGGGAGGAGAACACACCTGACACCTCCACATCCTCCATGGTCTCCCTTGTAAAAGTGGTCTGTTGTTCAGCGAGTTGTGTTTGTTGAGTTGTTTACCTTGTTGTGTTTGGGTGGAAATGTCTTGTTTTGCATGTAATGTAGGTATCTTCTAAATGGTCTCTAGGGGTGTAACGGTATACAAAAATGATCAATTAATGTGGAGCTCTGTTTTAAAGTCAAGGTTTGGTTTcgaaacaacaaatattttacatttgttctCACTGAATAA
>TCONS_00062037
GACTAATAAAAATCAACCGACAGCTCTGAATGCAGTTAGCTGAATTTGAAGGGATCTAGTTGAACCACAAAAAGGACGGAAGCATCTAAAGTGGATGATTAGATCTGAAACGCTCggaagacacacacaaacacactaaagaTTCTGAGTCTGAAATCACAAGCCATGTGCTGTAAAGGAGCTGTTCTCACACATGTGTCTTCAGACAAGAAAGAGAACGACAACAGGTCTCCACAGTGTGTACGCTCATTTCTTCCAGTCAGCACTGAGAAGGAAGCACACCATTGCTGTTCAAAAGCATTACAGCTAAAGAACATGTGACAGAGGATATACGGTAAATGCTTACAACAGCAAAGGACAAGGCAGTGGAAACTACACTTTTAGTCACAAAGAGTTTGTGATGTCAGTGGAG

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0051674 localization of cell biological_process
GO:0001708 cell fate specification biological_process
GO:0072359 circulatory system development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006928 movement of cell or subcellular component biological_process
GO:0043009 chordate embryonic development biological_process
GO:0030154 cell differentiation biological_process
GO:0043603 cellular amide metabolic process biological_process
GO:0048513 animal organ development biological_process
GO:0043604 amide biosynthetic process biological_process
GO:0016477 cell migration biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:0043043 peptide biosynthetic process biological_process
GO:0090596 sensory organ morphogenesis biological_process
GO:0001501 skeletal system development biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0045165 cell fate commitment biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0006412 translation biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0048869 cellular developmental process biological_process
GO:0048870 cell motility biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0040011 locomotion biological_process
GO:0006518 peptide metabolic process biological_process
GO:0007389 pattern specification process biological_process
GO:0007399 nervous system development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0009792 embryo development ending in birth or egg hatching biological_process
GO:0044391 ribosomal subunit cellular_component
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022626 cytosolic ribosome cellular_component
GO:0022627 cytosolic small ribosomal subunit cellular_component
GO:0044445 obsolete cytosolic part cellular_component
GO:0005840 ribosome cellular_component
GO:0015934 large ribosomal subunit cellular_component
GO:0015935 small ribosomal subunit cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0000987 cis-regulatory region sequence-specific DNA binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0003735 structural constituent of ribosome molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000117769

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062034 False 2521 lncRNA 0.38 5 32560580 32737158
TCONS_00062035 False 423 lncRNA 0.44 4 32584456 32737156
TCONS_00060580 False 1770 lncRNA 0.39 3 32626010 32737091
TCONS_00062036 False 862 lncRNA 0.46 3 32627114 32737156
TCONS_00062037 True 412 lncRNA 0.42 3 32679267 32737156

Neighbor

gene id symbol gene type direction distance location
XLOC_031193 NA coding downstream 23831 32516671 ~ 32536749 (-)
XLOC_031192 ntmt1 coding downstream 55300 32499070 ~ 32505280 (-)
XLOC_031191 gpr107 coding downstream 70784 32460453 ~ 32489796 (-)
XLOC_031190 ncs1a coding downstream 114745 32402026 ~ 32445835 (-)
XLOC_031189 fbxw2 coding downstream 163651 32380026 ~ 32396929 (-)
XLOC_031195 NA coding upstream 45509 32782667 ~ 32784800 (-)
XLOC_031196 ptpa coding upstream 56728 32793886 ~ 32814417 (-)
XLOC_031197 lrsam1 coding upstream 128206 32865364 ~ 32882162 (-)
XLOC_031198 NA coding upstream 148021 32885179 ~ 32885874 (-)
XLOC_031199 pole3 coding upstream 150961 32888119 ~ 32890807 (-)
XLOC_031187 NA non-coding downstream 203578 32342243 ~ 32357002 (-)
XLOC_031181 BX004981.3 non-coding downstream 390294 32170170 ~ 32170286 (-)
XLOC_031179 NA non-coding downstream 424159 32135202 ~ 32136421 (-)
XLOC_031178 BX004981.1 non-coding downstream 428350 32129482 ~ 32132230 (-)
XLOC_031200 NA non-coding upstream 185498 32922656 ~ 32927919 (-)
XLOC_031209 CU019641.3 non-coding upstream 548368 33285526 ~ 33285597 (-)
XLOC_031210 NA non-coding upstream 549429 33286587 ~ 33286658 (-)

Expression


Co-expression Network