XLOC_031196 (ptpa)


Basic Information

Item Value
gene id XLOC_031196
gene name ptpa
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32793886 ~ 32814417 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060581
AactactaaatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtatgtatgttacacactatatatatttttacaaattccCCTATCTATTTGGAATCGACAATGCAACGTTGTAGCAGCTATTTTTTTCCACATAAATGTACATGGAGATACATgCAGTTTACTTTCGCTGATCAAGTTCAAGGAATATATTTGAGGCGAAACTGCGGGTGAGAGTTGAAGGGTTGTGTTTTCATCACCACAGTAAACATGGCGGAGACAGAACAGGCGTCAGGCTCCTCCCATGAGGATGACAAACCTCCCAGTTCTGTCGGTTTCAACTTCATGGTGCCAAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAAAGATCACAGGCATATGCAGACTACATTGGATTCATTCTGACCCTGAATGAGGGAGTAAAGGGAAAGAAGCTTACATGTGAATACCAGGTGTCTGAGACAGTGGAGAAGTTGCTTGCTTTGTTGGGAACATTAGATCAGTGGATCGATGAGACTCCACCAGTAGACCAGCCTTCTCGCTTCGGCAATAAAGCTTTCCGAACATGGTATGCCAAACTAGACCAGGAGGCAGAGGCTCTGGTTGCAGGAGTTCTGCCAGCTGAGCGTCAGGATGCTGCTCCAGAAATTGCTGTGTACCTCAAAGAGTCTGTGGGCAACTCCACTAGGATTGACTATGGAACAGGTCATGAGGCCGCATTTGCTGCGTTCCTCTGCTGTCTTTGTAAAGTGGGAGCTCTGCGCATGGAGGACCAGCTGGccattatatttaatgtttttgacaAGTATCTGCGAGTGATGCGCAAACTGCAGAAGACGTACAGGATGGAGCCGGCAGGAAGTCAGGGGGTGTGGGGTCTTGACGACTTTCAGTTTCTTCCCTTCATATGGGGAAGCTCACAGCTTATAGACCACCCAACCCTGGAGCCCAGACACTTTGTGGAGGAGAAGGTTGTAAACGAGTACCACCAAGACTACATGTTTCTGGAGTGCATTAAGTTCATCAACGAGATGAAAACAGGCCCTTTTGCCGAGCACTCAAATCAGCTTTGGAACATCAGCGCCGTTCCTTCATGGTCTAAAGTGAATCAGGGCCTCATCCGAATGTATAAAGCAGAATGTCTAGAAAAATTCCCCGTCATCCAGCATTTCAAGTTTGGCAGCCTCCTCTCCATCCAGCCAGTCAAGCCATGAGAAACAACAAAACGAATGCACACCTCTTCAAGAGCACAACAAAGACCCCAACTCTAGACGAAACTGCTTCAATCCCATGTTAACAAACCTTAACATGTGCTCTCTTCACAAGAGGTGAACGATCTTGCTCCTGTAGATCTATTTTCCTAAGGAGTTCAGTTTTTTCAAAGCTGCTCTAATACATACTACCAAAATAAAGTAAGCAAACCTGTTGACCTTGATCATCTGGTTCAGGAGTTTTTAAGCTgaactgaactctgcaggacagtggaTCTCAGAAGCCCTGCTCTTCACAATCTATTAGTTGTGCAaatcaaatcccacttctgataTTCCTCTTAAGTGATGCAATTTGTCTGTAAGGTTTTATTTATCTACCCCCATTCAAGCAGGAATTTGAACTGCTCAGACACCTCCACTGAGCAGtaatgcacatatatatattttcatctggcatttatatttatttatgtgtatataaagAGCAGCTTGTCACAGTGAACGGTTGAAGGCTTGGTTTTGGTTTAATGGGTTTTTATTTCCTGTGTGCAAACGTCTGAAGCCAACAAACAACAATGTGTGTTACGAGAGGTATTTTGGAGCATCATTGTCTTAAAAAGCACTTTTTAAGTAACTTGCTATTCAGTTATCAAAGATTGCTGAGGCGTGTTTGCTGTGAATAGTATTTTTTAAACTGTGTAAGACATTAAGATGTTATCTACCAttgtagttttacatttttttgctctgcttctttctttcatattCCCTTCACTGCAAATAGGACGAGTAATCGATGTGTAAAAAATGTCAAGAAATCACTTCAAGCTAACAGTTTGGTAGCAGCACATGTAGCTAACACCATAGTCTTCCATTGCTAAATCAAAGCAATGAATTGAAATCCGGAAGTTTATTATTATGCTAAATCAGTGAAGCGTATTTGGTTTTTAAAGTTTATTCTGTGTAAATAAATGGGATCTGTCTGCTTCAAAACCACTGGGGtgatcattttaaaagaaagaaaaaaatcaaataactaAAATATGGATGTAAAGCTTTTCAAGTGTTAGAACTGGAGGAAATATTTGTGCATACTTCTACACCGAAACAAATATTGCAATTCACAGAGTATGTTTTGATGGCTTTGCACATTATTGCACACActttagatcagggatgcccaaactagggcccaaaGTTGGCCTGCAGTAAGCAATTAATTTAGCTGTCATCGCCATTTGAGAAGAGAGGAAGAATGATGTTGTCATTTATAATCTTTTGTCTATTTGTTTTAGTGTTAAAATCTAATTGAAATTAAACGTCTCAATTAAAtagtgtaaatgaatcagatttagtttataTGTACACTGTCACCTGACAGGacaaatcaaaacaaagacagattcTGCTTGGCtaatgtattcagcattgaactccactgttatAAATATGAAGGTTTATGTTATTATTGCaataagttttcattttaaatgtcatgttgcattagttaataagagtcatgttttttatttactgttaaatCTTATGACATAGactaggaaattacccatggcaacttaaATGTAATGTAGCTTGGTATAAATACTTTCGGCcacagctctcaatgatatttggcttTTGGCCCTTTATAGAACATTTTGATggatgcaaacaaaaacaatagtcccaatgtatttcctgttttacatttttaatttttgtaacttctgagaatccaaaaaggtccacatattgacaaaggatgttatgatagctgttttaacatgaatTTCAGTTTGAAGTGCCTCTTGTTAAAAGTTATGAAAtggtttgataacaagcaggaaatgttcatgggccagtgacacGACCACAGTAAAATGCTCTATATGAAAAGTTTGTGAAAAGTTAATGGAACCACATTTTGATTCAGAATCTAATCATTTGAAATACGAAGTGGATAAAAATGGCCTTTCAGAATGCTTCCACACTAGCGCTTTTGCACTCTCTGTGTTCACTTGGATCAGGTGAATGATGTTTTCTGAACTTGCACACCTGGGCATGTGGCATTTGCTGGCTAGCCAGATTAGTTTTAGTTTGGTTTTCACCAAGTCTGGGTTTTAGGCACTATGAATGTAGCTCAGCTCAGCTGCTCCATAATTCCTTGGCAGCAAAGAGTGACTAAAGTCAAGGTGCCTTGGTGTTACCTAAAATCCAAGATTGGTGCTTAGTAAACTAAAACTGAACTGGCAAGCCAGCTAATCTAGCTTCATGGTAAAGGTCCCTGAACATTAACCCAAGTAAAAAAGATTATCTAGAAAAACATGTTTGATAAATGCATTATATTCCTGACAAACAGATACACGTGGCGTTCTGTttagttgatttaaaataaagaaaatattctaAATTAGAAGTACAAAAATGAGATGAGCATCCATTCATTTCAATGTCTTCTGCGTAGTGGTTTCCTAGCAACAATTGGCACTCAGTTGATGCAGTCAAACCATGGttctaaattctaaataaaaccaaaaacaacagtgtgaacacatttacacacaattgAACCTGCGTTAACTTAGGACCAAACAATCGACTCAAGAAAGCACAACTATACatttctgttttaaattaaaCAGTCTGAATTAAACTGGGCTGTCCACCAAAATGAAATTACACTTAACCTCAAGcttttctgagtttctttcttttttttttctgattgcaaAAGAAAATTTGAACATTTAAAGAATGTCAGAAACTGCAATGAATATGCATCTATAGTAGGAAGAGAAGTCAATGTTTACTAATTccaaaaattctttaaaaagttttcttttgtgtccatcagaagaaagaaaaaaaaggagattTTGAATAAGTGGTAGATTTATTACAATGtcttttaaagctttttaaatgtataaaactattttaaagacTTTATAGGCCTAAAGAGATTGTAGAAACCACTACAATCTTAATGGTCTCAATGATCTACCTGGGATTACTTAGCTTTTCTAAAATACAGTCCAAGGTGTTAACTGCTATATCAATCCTCATTGACACTAGCAAATCTTGAGTTAACATTGGCAATTTAGCTTGAGGGGTGTATTAAAactggttacagattttcaacaGTCTGTTAATTTCACAAGACTCAATTTTCGAAATAATTTGTCTTAAATTTGGCTTTTTGGGGGATTTAGTATACTAATAATAGGCCATGGCACTGATAATTATCTGCTTTCTAACCTCCACAATTAGTTTAATCACTAATATTGTGACTCTTGTACATGCAAGATCAACAATTTGTGAATTAGGTAACAGTATagttaacaaatatttaaagtttCAGCATTGTCCTGTTTTTGTGAAAAATTATCCTCAACTAAAGGGTTTCATCACTGAAATAATTTAGGCAAACTATGGAATTATTAGTATAGGTTTTTACAATCATTTTATCTACAttttaacttaaaaatgtaatgGTTTGTAAAACAGGCAATCCTatagttttatttcaaaaacCATGGTGCTTTAATATTGATTTAAtcagtaatttaaatataaaatttttacatACAATAAAGATGAAGCAAAGTATATAGCCTATGTGGCTTCTTTTTTTGACATTTGCACAGGCTAGCCACAAGACCTACACTCAGTCCAGGCCAATTCCCTTTGTCTATTTTCAGTTGAGTCACTTTCTGTGGCTGGCAAATCCAGCATCTGCCCAGTCACTGTAGTTTGGCCGCCCCACTGTGAGACTCGGCTCTGCTTGCTGAGTAATTGACATGAACGCATGTCGAATTCACCCCCAACACCCATCTGCCTCCCCCGTCCCCATTCAGCTGTATTCAGACGCGGGCTCCACTGCTGAGTTCAACAGGCGCAGTCGAGATAAGACAAGATTAAAGTCGTGCCTTTTGTCTTCATTAACATTTGATGTTACCTCTGAGCCGGTTTCACCAGGCTGCTCATTTTGGAAAAGTACAAACACAGGCGCGTTTAGTATATATATCACGTCCAGCAACTAACGAAACACGTGCTATCTGTGTTGAATGTTGTGTGCGTGTATAATCGTAAGCGCACGGGTCCTTCTTCCTTCTCGTAAAACGAAAAAATCTGCATTGGTTCCGTGCGCGCGCTCGACATGGTAGCGTTTCCCGTGCTCGCCACGCGGAGGAGCTCGCCACACACCACAGACCGAGTAAGCGCTACATCTCCTgtcaaaattaagcaaatataaCAACAGgctttttattaaacacatttgttAGCGTTAGCATTGGCGCATTTCCCTAAAGCAACCTATTAAGAACAAAACAAACGAGTTTAAGTAGAACTCATCATATAAAACCGACGAGAATAAAGCCATGCTGAATCTTTCAGTTGTTTCACAATAATGTCCGTCGCTCTCCAAAAAACAAGCTTAATACATAAATTTTACAACACTGAGAATTGTAAACGCATTATAATGTAGCACATAAACAAACCCCGCGACCGAATTACCTGCGATTCTAAGCGAAACGTAAATACGCGCGACGCGGCTATTCTCGTCGAAAATAGCCAACACAACGAGCTGATAACAGCCACTGTATGATGAGGTTGATGTGTCGGGTGTACTGCGGTATCTCAGATTGAGAGGAGTCGAGAGGTTTCGGCTggagatgagagagagagagagaccggaGAGAGGACAGGGAGGGGAGGGTGGAGGGGGTTGCAGGGAGCAGCGGATTCGAGGTCAGCCCGAGGTGCCGCTACATAGGCGCTCTAATAccttcattcattgattttgaaGAACACCACCATGTGGCATACAGCAGAGATAACACAGCCTGCAAGTTTACTGAGAGTTTCTGGCTAAAAAAGTGCGCGCGCCTTGAACACAGTGCCCGCCACCAGAATGTGACGCGTGCGTCAGGTAAAAGTTACAGCTCGTTTTCAATGTTGGATTTGAGTGTATTACTTTGCTTTATTCTCTTTGA
>TCONS_00060582
GTGTTTTCATCACCACAGTAAACATGGCGGAGACAGAACAGGCGTCAGGCTCCTCCCATGAGGATGACAAACCTCCCAGTTCTGTCGGTTTCAACTTCATGGTGCCAAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAAAGATCACAGGCATATGCAGACTACATTGGATTCATTCTGACCCTGAATGAGGGAGTAAAGGGAAAGAAGCTTACATGTGAATACCAGGTGTCTGAGACAGTGGAGAAGTTGCTTGCTTTGTTGGGAACATTAGATCAGTGGATCGATGAGACTCCACCAGTAGACCAGCCTTCTCGCTTCGGCAATAAAGCTTTCCGAACATGGTATGCCAAACTAGACCAGGAGGCAGAGGCTCTGGTTGCAGGAGTTCTGCCAGCTGAGCGTCAGGATGCTGCTCCAGAAATTGCTGTGTACCTCAAAGAGTCTGTGGGCAACTCCACTAGGATTGACTATGGAACAGGTCATGAGGCCGCATTTGCTGCGTTCCTCTGCTGTCTTTGTAAAGTGGGAGCTCTGCGCATGGAGGACCAGCTGGccattatatttaatgtttttgacaAGTATCTGCGAGTGATGCGCAAACTGCAGAAGACGTACAGGATGGAGCCGGCAGGAAGTCAGGGGGTGTGGGGTCTTGACGACTTTCAGTTTCTTCCCTTCATATGGGGAAGCTCACAGCTTATAGACCACCCAACCCTGGAGCCCAGACACTTTGTGGAGGAGAAGGTTGTAAACGAGTACCACCAAGACTACATGTTTCTGGAGTGCATTAAGTTCATCAACGAGATGAAAACAGGCCCTTTTGCCGAGCACTCAAATCAGCTTTGGAACATCAGCGCCGTTCCTTCATGGTCTAAAGTGAATCAGGGCCTCATCCGAATGTATAAAGCAGAATGTCTAGAAAAATTCCCCGTCATCCAGCATTTCAAGTTTGGCAGCCTCCTCTCCATCCAGCCAGTCAAGCCATGAGAAACAACAAAACGAATGCACACCTCTTCAAGAGCACAACAAAGACCCCAACTCTAGACGAAACTGCTTCAATCCCATGTTAACAAACCTTAACATGTGCTCTCTTCACAAGAGGTGAACGATCTTGCTCCTGTAGATCTATTTTCCTAAGGAGTTCAGTTTTTTCAAAGCTGCTCTAATACATACTACCAAAATAAAGTAAGCAAACCTGTTGACCTTGATCATCTGGTTCAGGAGTTTTTAAGCTgaactgaactctgcaggacagtggaTCTCAGAAGCCCTGCTCTTCACAATCTATTAGTTGTGCAaatcaaatcccacttctgataTTCCTCTTAAGTGATGCAATTTGTCTGTAAGGTTTTATTTATCTACCCCCATTCAAGCAGGAATTTGAACTGCTCAGACACCTCCACTGAGCAGtaatgcacatatatatattttcatctggcatttatatttatttatgtgtatataaagAGCAGCTTGTCACAGTGAACGGTTGAAGGCTTGGTTTTGGTTTAATGGGTTTTTATTTCCTGTGTGCAAACGTCTGAAGCCAACAAACAACAATGTGTGTTACGAGAGGTATTTTGGAGCATCATTGTCTTAAAAAGCACTTTTTAAGTAACTTGCTATTCAGTTATCAAAGATTGCTGAGGCGTGTTTGCTGTGAATAGTATTTTTTAAACTGTGTAAGACATTAAGATGTTATCTACCAttgtagttttacatttttttgctctgcttctttctttcatattCCCTTCACTGCAAATAGGACGAGTAATCGATGTGTAAAAAATGTCAAGAAATCACTTCAAGCTAACAGTTTGGTAGCAGCACATGTAGCTAACACCATAGTCTTCCATTGCTAAATCAAAGCAATGAATTGAAATCCGGAAGTTTATTATTATGCTAAATCAGTGAAGCGTATTTGGTTTTTAAAGTTTATTCTGTGTAAATAAATGGGATCTGTCTGCTTCAAAA
>TCONS_00060583
ATGGCGGAGACAGAACAGGCGTCAGGCTCCTCCCATGAGGATGACAAACCTCCCAGTTCTGTCGGTTTCAACTTCATGGTGCCAAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAAAGATCACAGGCATATGCAGACTACATTGGATTCATTCTGACCCTGAATGAGGGAGTAAAGGGAAAGAAGCTTACATGTGAATACCAGGTGTCTGAGACAGTGGAGAAGTTGCTTGCTTTGTTGGGAACATTAGATCAGTGGATCGATGAGACTCCACCAGTAGACCAGCCTTCTCGCTTCGGCAATAAAGCTTTCCGAACATGGTATGCCAAACTAGACCAGGAGGCAGAGGCTCTGGTTGCAGGAGTTCTGCCAGCTGAGCGTCAGGATGCTGCTCCAGAAATTGCTGTGTACCTCAAAGAGTCTGTGGtcaAATTACTAACAGTACTGAAGAGtttaagacagtggaTCTCAGAAGCCACACCTCCACTGAGCAGtaatgcacatatatatattttcatctggcatttatatttatttatgtgtatataa

Function

symbol description
ptpa Predicted to enable peptidyl-prolyl cis-trans isomerase activity and protein tyrosine phosphatase activator activity. Predicted to be involved in mitotic spindle organization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PTPA (protein phosphatase 2 phosphatase activator).

GO:

id name namespace
GO:0007052 mitotic spindle organization biological_process
GO:0000159 protein phosphatase type 2A complex cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0008160 protein tyrosine phosphatase activator activity molecular_function
GO:0016853 isomerase activity molecular_function
GO:0003755 peptidyl-prolyl cis-trans isomerase activity molecular_function
GO:0019211 phosphatase activator activity molecular_function

KEGG:

id description
ko05415 Diabetic cardiomyopathy
ko04931 Insulin resistance
ko01009 Protein phosphatases and associated proteins
ko01002 Peptidases and inhibitors

ZFIN:

id description
ZDB-GENE-040801-11 Predicted to enable peptidyl-prolyl cis-trans isomerase activity and protein tyrosine phosphatase activator activity. Predicted to be involved in mitotic spindle organization. Predicted to be part of protein phosphatase type 2A complex. Predicted to be active in cytoplasm and nucleus. Orthologous to human PTPA (protein phosphatase 2 phosphatase activator).

Ensembl:

ensembl_id ENSDARG00000031985

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060581 False 6264 mRNA 0.39 11 32793886 32814417
TCONS_00060582 False 1991 mRNA 0.43 10 32797890 32813956
TCONS_00060583 True 558 mRNA 0.46 9 32798402 32813933

Neighbor

gene id symbol gene type direction distance location
XLOC_031195 NA coding downstream 9086 32782667 ~ 32784800 (-)
XLOC_031194 NA coding downstream 56728 32560580 ~ 32737158 (-)
XLOC_031193 NA coding downstream 257137 32516671 ~ 32536749 (-)
XLOC_031192 ntmt1 coding downstream 288606 32499070 ~ 32505280 (-)
XLOC_031191 gpr107 coding downstream 304090 32460453 ~ 32489796 (-)
XLOC_031197 lrsam1 coding upstream 50947 32865364 ~ 32882162 (-)
XLOC_031198 NA coding upstream 70762 32885179 ~ 32885874 (-)
XLOC_031199 pole3 coding upstream 73702 32888119 ~ 32890807 (-)
XLOC_031200 NA coding upstream 108239 32922656 ~ 32927919 (-)
XLOC_031201 TUBB4B coding upstream 204347 33018764 ~ 33022014 (-)
XLOC_031187 NA non-coding downstream 436884 32342243 ~ 32357002 (-)
XLOC_031181 BX004981.3 non-coding downstream 623600 32170170 ~ 32170286 (-)
XLOC_031209 CU019641.3 non-coding upstream 471109 33285526 ~ 33285597 (-)
XLOC_031210 NA non-coding upstream 472170 33286587 ~ 33286658 (-)
XLOC_031218 BX296533.1 non-coding upstream 1423490 34237907 ~ 34238023 (-)

Expression


Co-expression Network