G1210502


Basic Information

Item Value
gene id G1210502
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 7432377 ~ 7435168 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1382376
TATTTGAAATGTCAGTGTTCAAGAGAAAATAAAACAGCAATATAAATATTAGCATAAAAATGAAGAGACTAAACACCGGGAGGAGCGTAGGAGGTCTAAGCATTTCATAAGAAAGATATTACAGCACGAGAGAGGATTAATTCAGCAGCGGacggacgtacacacacacacatatttataaTAATTTGCTCATATGGACAGAGGCATTCTTGCGCAAATGCACAAGATAAAGCACAGAAAAAAAAGTTACAGAAGGATAGAAACATTTTTttcaatatactttttttttgtttagtttCTTTTACAGGGTagtaaaatagagagagagaaaatgaacaCAATAATATGCGCAACACATATCACAAGTTAACTAGTCTACGTGTGTGTCACTCTGTTTACTTATCGTCTAAAGTTATTAGCAACTTTCTTTATATTTACACTGAAGAGTTAGTTAGTTGGCCTTCATGGTGCTTAGTTACTACATTGCAACACAAACTGTTGAAGAACATTTCAGAGATCGTTTTTTTTTTCCCCCGCTGTGGTTTTCTTATTTTTCTTGTAAAACAAATACAACACATTCCAGTAAGCCACGCCTTGAGGAGAGAGGACTTTTAGTTTGAAAATTCTGGATGTGGTCCGTACTATACAAACAATTGGCTCATACCATCGACAGGACTAGTGTTTATTTACAGAGGGGAAGAGCCTTCACAGGAccagggggtggagggatggaagcAAGGGGAGAGCCTTCACAGGAccagggggtggagggatggaagcAAGGGGAGAGTCTGAGGTTAGCGTTGCCAGAATGGATTTACACTGAGGGGATAGATACAGCGAAGAGCTaactctgtccctcctccctgcttCTGAAGTGGTATCTCCTCTGTGACATGGAGGGATGTGCTTGGCTCTGTTGACCTCTAACCTGGGTCAGTGCATTAGAGGACGTTTCGGGGTGGACTAGGAGGGAGGGTCAACAGTGGGGCCTGTGTACATTCAGTGAGTAGAGCCAAGGTCATTGCAAGCTGCCTCTTCATGCAGTGGTGTCCAGCTAGTTGCCGGACAGACGGATGGACTGGTGGCAAAGAAAAGACTTCATACTTATCTTATACTACTGAGTCATCAAAAAACACTTCCCACGTCAAGAAATATAGTCATCAGCACTTCAGGGTACGTAGCAAGGGATGAACACTCAATCTAGACTCTAGCGGCCTAAGAAGTGTCTAACTCCTAAGCACGCCGTGAAAAGATCTCTACTTTATCTTTATAGTATGAACAGTGCATCTCTATGGTCTGGCTCTCAAAGTGGGACAGCCAGTGAGGGGAGGGCACATCATCTGgttgaggaggggatagaggtgcATGGGTGGACAGCAGGAGGGTCTCTATACCCATCTGGGTAGTTTTAAAAGGGGGGCAGCGCCTACTATGCCAACAAGCCAGAAAATAGGGCTGATAGTACTATAACATGCCCCTCCTCCTCGGTGCTAGTTTTCTAATAGGGTTCATGCTCAGGTCATAAAAACAGTGAAAGATTCAAATCTTACCATTTAACTACGcttacaaaataatatttatagttTTTAGATACCACATCAGGTAAACGCTACGAGGGCATTTGTCGACCTGTATTTTTTTAAGGTGGTCGTCCTCGTTGCAACACTAATTCAATGCATAGTTGAATCTTCTGGAAGGTCTGTGGTTTGAACACATAGGGACATGCAGATTGGAATACTACTGTACCAGTACAATGGAATGCCCATTCCCGTGTCCCAAAGCGCTGTGGTGTAGGATCCCATAAGGCTGATCCTATATAGGAATCTTATCATGGCAATCTAGTAAAGTCAAACAAGGATCTACTTTCAGTCTCAGGAAAATAAGGAGTTACAATTATAATCCAACATGAAACATTTTATGGAACATCGTTAAAATATCCACCTGTGAATACATCACTGGGCAAATCCTTGTTATCTGAGCAAAGTTGTTTACGCTCAATCTGTTGTGTCTGAAGTGCATCCAAATGTATTGATTTAACCAAAACACAATCCCCCCTGAACCCCCAGTCTTCCGTATCTGCAAATACTGTTaatacttgttttttttttttagaacagACTTTCCAAAAAAAACAACTGTTTCTAGATAGCtttcagaaaaaaaataaaaatgtcaatgCTGTTCGCTCTTAAACCTTAAACGCATTCCAGATTCAAGAGCCCAAAGACAAACATTCGCAAACATCTCCATATTTCGTGTTATCATATGAGCGTAGCCAATAGAATCCAGACCCTGATTAGAGTAAACGCATTGAGAGGAGACgtaaggggtgggCTCATCGTATTTTCCATATCTATCCATCCTCCACCCATCCTACTTCTTCTCCTTCTTGGTGGACTTCTTCTTGGAGGCGGGGGTCTGGGCAGCCTTGGGGGGTTCAGGCTGAGGGGCGGCCTCAGAGGGCTGGGCCTGCAGGGCCTGATGTTGGGCTGccatctgctgctgctgctgctgctgctgggggtTGGAGGTCAAGGTGGCGGTGCTGCCAGGGATGTAGACGTTCTGGCGGTAGTCGGGCACGTGCTGCAGGGTGAACTGGGGGCTGTAACGGGTGCTTAGTCCCATGGTGCCCGGCCCCAGGGTTGCGGTCGCCTCGCTCACT

Function

NR:

description
protocadherin gamma-B4-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1382376 True 2668 TUCP 0.44 3 7432377 7435168

Neighbor

gene id symbol gene type direction distance location
LOC110488661 diaph1 coding upstream 46890 7251365 ~ 7385487 (+)
LOC110488659 NA coding upstream 182719 7247779 ~ 7249658 (+)
LOC110488658 LOC106604872 coding upstream 204621 7175176 ~ 7228229 (+)
LOC118938692 LOC106611811 coding upstream 345661 7083183 ~ 7087463 (+)
LOC110488657 LOC106604826 coding upstream 350384 6940410 ~ 7081993 (+)
LOC118938693 NA coding downstream 20714 7455882 ~ 7459050 (+)
fgf18a LOC106604790 coding downstream 541582 7976750 ~ 7986393 (+)
LOC110488706 NA coding downstream 890133 8325301 ~ 8335960 (+)
LOC110488707 apbb2 coding downstream 905037 8340205 ~ 8393946 (+)
tlr1 tlr1 coding downstream 1059124 8494292 ~ 8497395 (+)
G1210501 NA non-coding upstream 7454 7424568 ~ 7424923 (+)
G1210497 NA non-coding upstream 14913 7417078 ~ 7417464 (+)
G1210496 NA non-coding upstream 15352 7415759 ~ 7417025 (+)
G1210338 NA non-coding upstream 187104 7245062 ~ 7245273 (+)
G1210520 LOC106604879 non-coding downstream 24680 7459848 ~ 7481225 (+)
G1210549 LOC106604876 non-coding downstream 64180 7499348 ~ 7511622 (+)
G1210546 LOC106598371 non-coding downstream 66324 7501492 ~ 7517034 (+)
G1210582 LOC106604876 non-coding downstream 145940 7581108 ~ 7587543 (+)
G1209572 NA other upstream 675566 6752864 ~ 6756811 (+)
G1209622 NA other upstream 680663 6751352 ~ 6751714 (+)
G1209615 LOC106604863 other upstream 687587 6743934 ~ 6744790 (+)
G1208884 NA other upstream 1524608 5903921 ~ 5907769 (+)
G1210695 NA other downstream 375963 7811131 ~ 7811872 (+)
G1210708 LOC106604831 other downstream 393655 7828823 ~ 7836843 (+)
G1210736 LOC106596699 other downstream 463678 7898846 ~ 7922226 (+)
G1211167 NA other downstream 1329520 8764688 ~ 8765517 (+)

Expression


Co-expression Network