G1210587 (LOC106604822)


Basic Information

Item Value
gene id G1210587
gene name LOC106604822
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 7596688 ~ 7597620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1382489
GCTACAACTGTGCTTCCCAACGCGTTTTCTACAACAGTGACTTTGTACAAAGACTCTGTGAACACAGGCGCATTATCATTTGCATCCAGAACAGTGATATGTATCTTAACAGTTCCAGACCTTTGTGGGTCCCCGCCATCGACTGCAGTTAATATCAGGGAGTGTTCGCTCTGTTTTTCACGGTCAAGTCCAGACTGCAACACCATTTCTGCGTATTTACTTCCATCAGCTCTACTGTGTTGCTTGAGCACAAAATGATCGGTTGGTTTAACTGTGTAGCTTTGCAGTGAGTTCATACCCACGTCAGGATCAGCGGCTCCATCTAATAAGAAAACAGTCCCTATCGGCGAAGACTCCCCAATTTCCAGATGAATGTCCTTTTTTGAAAACACCGGGGCGTTGTCGTTTATGTCTTCAATTTCGATGGTAATCGAATATAATTCAAGTGGGCTTTCAAGAATCATTTCTAAACTGAAGCTACACGGAGATTTCTGACCGCATAATTTCTCCCTGTCAATCCTTTCCTTAACAACCAGATGTCCTTTGTTCTGATTCAGCTCTACATATTGGTTATTACCGTCTATAACTAACCGCGCCCGGCCTGAAATCAGCCTCTTCACGTCCAAACCCAGGTCTTTCGCCACATCTCCGACAAACAAGCCCTTTCTCATTTCCTCTGGTACAGAATATCGAATTTGTCCATTCACCGCACTCAGTACGCAGACAAGCAACATGGAGACTCGCACTTGCCATCTCAAACCCCAGACTGCGCTATTCACAGCCTCTCCAGCGCTCATCCTCCTAAAAATATCCATAACGTTACCCAAAACGGGGAAATATATAATGCAATCCAAAACTCACATACAACAGAAAAGCTCAAGAAGGTGTTGTTGTACTCCGTTAAAACTGCTTCGATGGTTCTGTGCGCAATAA

Function

NR:

description
PREDICTED: protocadherin beta-16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1382489 True 933 lncRNA 0.44 1 7596688 7597620

Neighbor

gene id symbol gene type direction distance location
LOC118938693 NA coding upstream 137638 7455882 ~ 7459050 (+)
LOC110488661 diaph1 coding upstream 211201 7251365 ~ 7385487 (+)
LOC110488659 NA coding upstream 347030 7247779 ~ 7249658 (+)
LOC110488658 LOC106604872 coding upstream 368932 7175176 ~ 7228229 (+)
LOC118938692 LOC106611811 coding upstream 509972 7083183 ~ 7087463 (+)
fgf18a LOC106604790 coding downstream 379130 7976750 ~ 7986393 (+)
LOC110488706 NA coding downstream 727681 8325301 ~ 8335960 (+)
LOC110488707 apbb2 coding downstream 742585 8340205 ~ 8393946 (+)
tlr1 tlr1 coding downstream 896672 8494292 ~ 8497395 (+)
LOC110488712 LOC106604779 coding downstream 907039 8504659 ~ 8509834 (+)
G1210582 LOC106604876 non-coding upstream 9145 7581108 ~ 7587543 (+)
G1210546 LOC106598371 non-coding upstream 79654 7501492 ~ 7517034 (+)
G1210549 LOC106604876 non-coding upstream 85066 7499348 ~ 7511622 (+)
G1210520 LOC106604879 non-coding upstream 117438 7459848 ~ 7481225 (+)
G1210591 NA non-coding downstream 6684 7604304 ~ 7605007 (+)
G1210592 LOC103373949 non-coding downstream 8368 7605988 ~ 7606297 (+)
G1210594 NA non-coding downstream 15163 7612783 ~ 7613155 (+)
G1210656 LOC106604828 non-coding downstream 123423 7721043 ~ 7769888 (+)
G1210657 LOC106604828 non-coding downstream 143343 7740963 ~ 7762287 (+)
G1210502 NA other upstream 161520 7432377 ~ 7435168 (+)
G1209572 NA other upstream 839877 6752864 ~ 6756811 (+)
G1209622 NA other upstream 844974 6751352 ~ 6751714 (+)
G1210695 NA other downstream 213511 7811131 ~ 7811872 (+)
G1210708 LOC106604831 other downstream 231203 7828823 ~ 7836843 (+)
G1210736 LOC106596699 other downstream 301226 7898846 ~ 7922226 (+)
G1211167 NA other downstream 1167068 8764688 ~ 8765517 (+)
G1212603 NA other downstream 2027468 9539127 ~ 9677903 (+)

Expression


Co-expression Network