G1210657 (LOC106604828)


Basic Information

Item Value
gene id G1210657
gene name LOC106604828
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 7740963 ~ 7762287 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1382573
CTTGTCTTTGTTGGGTAATGTTTGAGTCCTGTTCAACGTGTCATTTCCATTAATACTGATCAGTTCTGCATCTGCAGGTGGATACGGCGCAGGGAAAACCACTACGTCACTCTTCAGTGTGTCGGAACTGAAACACACGTCATACTGCTGAGTAGATTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGCGCTGTACCTTCTGAAACTGTCGTCTGTCCTGTAGCATTCTACAGCAATTAAACTAATGACGCTCAATAAAAATATCACTGACACCGAGGCAATGGCGATCAGCAAATACAGGTTTAAATCGGAAAAGCTCTCGTCCTTTCTTGGTACGTTTGTGAATTGAGTCTGGATTTCAATGGTACTTTCAACCACCACTACATCAATAGACACAGTCGCTGACAGTGAGGGTTCTCcgttatcagaaaccatcacgaCCAATGGGTGTGTTTTCAGGTCACTGTCACTCATTCGCCTCTTAGTCCTTAGTTCCCCGGTGCTGGTTCCGATTCGGAAGAGGTTGGTTCCCTTGGGCTCAGAGATGTGATAAGAAAGCAGCGCATTGTAGCCAGAGTCGGAGTCTACAGCCCTGATCTTGGCCACAAAGTAGCCTGCTTCAGCAGAATAGGGAATGTTCTCAGAGTTAACGGAGCCGTGATCAGAATAGGGCGCGAGAATCCCAGGACTGTTGTCATTCTCATCCAGAATAAAAACGTTCACAGTCACGTTGCTGCTGAGAGGAGGAACACCGGAGTCTGAGGCCTGAACTTTAAACTGGAAAGTTTTTATCTCCTCGTAGTTAAAAGACTGTAGACTGACTATATCTCCTGTATCTGAGTTTATATTTACAGATGATGATATTGAAACACTTTTATCTAATAATGAATACGTCATCTTTGCATATTTATCTGAATCAGGATCAAAAGCAGACATCATATAAATGACGTCGCCTATCGGACTGTTCTCTTTAACATAAACGTTAATCACGGGTTCTGAGAAGCGAGGAGCGTTGTCATTCACATCAGAAACGTGTACAGTAATAACGCTGGTGCTGGAGAGAGGCGGAGTCCCTTCATCCGTAGCTACGATGGTGACATTGTACTGAGTAGCACTCTCTCTGTCAAGAGGCCCATCAACCACTAATGAATAATCGTTTTtataattcaatttcaatttaaaggGCACTGGACCAACAAGTTTACTGTTAGTGAGGCCATTTTTACCACCATCTTTATCTGTGACTGTCACCAAGGCGACCACTGTCCCTATCTCAGCATCCTCTTTCACGGGGCTCGCGAGTGACGTCACATAAATTTCTGGGAAATTGTCATTCAAATCAATAACTTCCactaacagtttcccgtgtgcacTACGGGGTGATGAGCCTTGGTCTGTCGCCTGCACACGAATTTCATATGCAGGACTTTCCTCGTAATCCACATTTCCCTTAACTGTGATTTCTCCAGTGTCTGAatttatatcaaacatatcaGAGGGGTTCACATTACCACGTTTGATAAAGGAATATACAACTTTACCGTTGACTCCCTCATCTACATCTGTGGCATTTAGCTGAATCACCTTAGTTCCGAACGGAACATTTTCTTTAACGCGAACCTTGTACAGCGGCTGACTGAACGTGGGTGAATTATCATTGGCATCAATTACGTTCACTACTATCAGCAATGTCCCAGATCGTGGAAGTTTTCCACCATCTACAGCGGTCAGTGTGAGCTGGATCACGGGCTGTTTCTCTCGGTCTAACGCTTTCTGCAGTACTAACTCAGCAGACACACTCTGCTCTCCACCGCTCTGTACATCCAGGGAGAAGTGTTCATTCGGGCTCAGCTTGTAGCTCTTTACCGAGTTAGCTCCTATGTCTGCGTCATTTGCTATTGGTAGCATATATCGCTCGCCCGGCGTTGAAGACTCAGAGATGTTAAATGTGTGGGATTTTTCAACAAAAGATGGTGTGTTATCATTAATATCTAAAATATTAACCTCAATTCGATGCAGAAGCACAGGATGGCTTAATATGGCTTCCATATTCAAAGAGCACTTCATCGTATTCGGACAAAGCTCCTCTCGGTCTATTCTCTCGTTAACGTAAAGAATCCCTGTTTTTAAATCCGCCTCAAAATACATCTTACTATTTCCGGAAACAATCCTTAGACCCCTGGACTCCAGTTCGTGTACATTAAGGTTCAAATCCTTAGCGAGATTCCCCACAAACGtgcctttgtccacctcctctGAAACGGAGTAAGAGATCTGCGCTGCAGACCAGTCTAATAAACAAAGCAACGCGACGCACTGAATCCAAAAGCTTTCCCTTTGTCTTCGACGATCCATCGCTGCATGTATAAAAACAACTGAATCCAATAAGTAAGGGTCATGTATCCATCAAAACCCGAAGTATTCCGTTAAATGTCGGACATTCTGTACACAGCTCAGCCCTCTCCGTCTCATCACCACGACCGTTTCTCTTC
>TU1382576
CTTGTCTTTGTTGGGTAATGTTTGAGTCCTGTTCAACGTGTCATTTCCATTAATACTGATCAGTTCTGCATCTGCAGGTGGATACGGCGCGGGGAAAACCACTACGTCACTCTTCAGTGTGTCTGAACTGAAACACACGTCATACTGCTGAGTAGATTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGCGCTGTACCTTCTGAAACTGTCGTCTGTCCTGTGGCATTTTACAGCTATTAAACTGATCAGGCTCAATAAAAATATCACTGACACCGAGGCAATGGCGATCAGCAAATACAGGTTTAAATCAGAGAAGCTCTCGTCCTTTCTTGGTACGTTTCTGTATTGAGTCTGGATTTCACCTGTACTTTCAACCACCACTACATCAATAGACACAGTCGCTGACAGTGAGGGTTCTCCGTTATCAGAAACCAATACGACCAACGGGTGTGTTTTCAAGTCATTGTCACTCATTCTCCTCTTAGTCCTTAGTTCCCCGGTGCTGGTTCCGATTCGGAAGAGGTTGGTTCCCTTGGGCTCAGAGATGTGATAAGAAAGCAGCGCATTGTAACCAGAGTCGGAGTCTACTGCCCTTATCTTGGCCACAAAGTAGCCCGCTTCAGTAGAATAGGGAATGTTCTCAGTGTTAACGGAGCCGTGCTCAGAATAGGGCGCGAGAATCCCAGGACTGTTGTCATTCTCATCCAGAATAAAAACGTTCACAGTCACGTTGCTGCTGAGAGGAGGAACACCAGAGTCTGTGGCCTGAACTTTAAACTGGAAAGTTTTTATCTCCTCATAGTTAAAAGACTGCAGGCTGACTATATCTCCAGTGACTGAGTTTATATTGACCATTGTAGACAGCTGCACTGAGTTGCTGTTACTCTCTAAAAATGAGTAGGTCACATGACTATTTTCATTGACGTCAGCATCAACTGCAGACACCGTTTTAATTACATCTCCTACCGGACTGTTCTCTTTAACATAAACATTAATCACGGGTTCTGAGAAGCGAGGAGCGTTGTCATTCACATCAGAAACGTGCACAGTAATAACGCTGGTGCTGAA
>TU1382572
TTAAACTGGAAGTGCAGACACATGTAAACATCTGCGGAGGAGAGTTCCTCTTACCTTCTCTTTGCTGGGTAATGTTTGAGTCCTGTCAAACGTGTCATTTCCATTAATACTGATCAGTTCTGCATCTGCAGGTGGATACGGCGCGGGGAAAACCACTACGTCACTCTTCAGTGTGTCTGAACTGAAACACACGTCATACTGCTGAGTAGATTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATTGGGGCGCTGTACCTTCTGAAACTGTCGTCTGTCCTGTGGCATTTTACAGCTATTAAACTGATCAGGCTCAATAAAAATATCACTGACACCGAGGCAATGGCGATCAGCAAATACAGGTTTAAATCAGATAAGCTCTCCTCCTTTCTTGGTACGTTTCTGGATTGAGTCTGGATTTCACCTGTACTTTCAACCACCACTATATCAATAGACACAGTCGCTGACAGTGAGGGTTCTCCATTATCAGAAACCAACACGACCAACGGGTGGGTTTTCAAGTCATTGTCACTCATTCTCCTCTTAGTCCTTAGTTCCCCGGTGCTGGTTCCGATTCGGAAGAGGTTGGTTCCCTTGGGCTCAGAGATGTGATAAGAAAGCAGCGCATTGTAACCAGAGTCGGAGTCTACAGCCCTGATCTTGGCCACAAAGTAGCCCGCTTCAGCAGAATAGGGAATGTTCTCAGTGTTAACGGAGCCGTGATCAGAATAGGGCGCGAGAATCCCAGGACTGTTGTCATTCTCATCCAGAATAAAAACGTTCACAGTCACGTTGCTACTGAGAGGAGGAACACCAGAGTCTGTGGCCTGAACTTTAAAACTGAATGTTTGTATCTCCTCATAGTTAAAAGACTGCAGGCTGACtatatctcctgtttctgtgttTATATTGACCATTGTAGACAGCGGTAGTGAGTTGCTGTTAATCTCTAATGAGTAGGTCACATGACTATTTTCACTGGCGTCAGCATCAACTGCAGACACTGTTTTAATTACATCTCCTATCGGACTGTTTTCTTTCACATAAACGTTAATCACGGGGTCTGAGAAGCGAGGAGCATTGTCATTCACATCAGCAACGTGTACAGTAATAACGCTGGTGCTGGAGAGAGGCGGGGTCCCTTCATCCGTAGCTGTGATGGTGACATTATAATGAGAAGCGGTCTCTCTATCAAGAGGCCCATCTACAACTAACGAATAATAGTTTTTATAGTTTGTCTCCAATTTAAAGGGGACTTTATTCTCAACTTCACAATGTACAACCCCGTTTTTGCCACCATCTTTATCTAGGACTGACACGAGAGAAATGGCAGTGCCAACCTTAGCGTTCTCCTTCAATCTGTCTAAGAGTGACGTAACAGTGATCTCAGGGGCATTGTCGTTGAGGTCCACCACTTCTACCAATACTTTACAGTGTGCTGCCATCGGGGGCTGGCCTCTGTCGCTTGCCTCTACCCGGATCTCGAACGCCTTTCTTTCCTCAAAGTCAATATTGCTTTTTACTGTTATAACGCCAGAGTTGGGGTCGATATCGAATATATCTAGAATACGGTCTTGATCTTTATTCCTAAGAGAGTAGACAATCTCACTATTTGTACCTTCATCAGCATCAGTCGCGTTCACAGTGAATACCGTTGTTCCTATGAGCACATTCTCGGAAATTTGAGTCTTATACAAAGAGCTAGTAAATACCGGAAGGTTATCATTAATATCTAAAACATTAACAATAATCTGTGACGTACCAGACCTCTGTGGATTTCCTCCATCTACAGCGGTCAGTGTGAGCTTTATCACAGGCTGTTTCTCTCGATCTAAAGCTTTCTGCAGCACTAACTCAGCAGACACACTACCTCCTCCATTGTGTATGTCAAGAGAGAAGTATTCATTAGGACTAAGCTTGTATGTGCTTACAGCATTCTTACCAACATCCAAATCAGAAGCCTCTGATAAAGTGAATTTAACTCCAGGTAAAGTGTTCTCAGCTACGTTTATAGTTTGTGATTTCGCACTAAACGACGGAGCGTTATCATTAACATCTACAATATTCAGCTCTAAACGGTAAAGCTTCAACGGATTGTTGATAACCGCCTCTACGATGACTGTACATTTCAGATCCTCTGCACAAAGCTCCTCTCTGTCTATTCTTTCATTCACATAGAGAACACCAGTCTTTAGATTTACCTCGAAATACTTTCGCTTGGACCCGGTGACAATCTGAAACATACGCGACTCCAAATCCTGGACATTGAGGTTTAAATCCTTAGCGATATTTCCCACGGAAGTCCCCGGGTTTACCTCCTctgagacggagaaggagagctgCCCAGACACCGCTTCCCAGTAACACTCGAGGAGCACAATAACAAAATACGTCACAATAGATATCCTTCTATTCAGTAAAGACATAATTCCATCGAAAGTGAGCTGATCATAGACCCGAAGAGACAATCAAAGCATCGAAAAATATACGTAACAAATTCAGCTTATTTTTTACACTTATGTGTACTCCGCTTCGACCAGTCTCCCTCTCGTCCTGC
>TU1382575
CTTGTCTTTGTTGGGTAATGTTTGAGTCTTGTTAAATGTGTAATTTCCATTAATACTGATCAGTTCTTCATCTGGATACGGCGCAGGAAAAACCACTACGTCACTCTTCAGTGTGTCTGAGTTGAAACACACGTCATACTGCTGAGTAGATTTAGAGTAAGACCAGCTCCCGTCAGGGTGTGTGGTGATCATAGGGGCGCTGTACCTTTTGAAACTGTCGTCTGTCCTGTGGCATTTTACAGCTGTTAAACTGATGAGGCTCAGTAAAAATATCACTGACACCGAGGCAATGGCGATCAGCAAATACAGGTTTAAATCAGATAAGCTCTCCTCCTTTCTTGGTACGTTTCTGGATTGAGTCTGGATTTCACCTGTACTTTCAACCACCACTATATCAATAGACACAGTCGCTGACAGTGAGGGTTCTCCATTATCAGAAACCAACACGACCAACGGGTGGGTTTTCAAGTCATTGTCACTCATTCTCCTCTTAGTCCTTAGTTCCCCGGTGCTGGTTCCGATTCGGAAGAGGTTGGTTCCCTTGGGCTCAGAGATGTGATAAGAAAGCAGCGCATTGTAACCAGAGTCGGAGTCTACAGCCCTGATCTTGGCCACAAAGTAGCCCGCTTCAGCAGAATAGGGAATGTTCTCAGTGTTAACGGAGCCGTGATCAGAATAGGGCGCGAGAATCCCAGGACTGTTGTCATTCTCATCCAGAATAAAAACGTTCACAGTCACGTTGCTACTGAGAGGAGGAACACCAGAGTCTGTGGCCTGAACTTTAAAACTGAATGTTTGTATCTCCTCATAGTTAAAAGACTGCAGGCTGACtatatctcctgtttctgtgttTATATTGACCATTGTAGACAGCGGTAGTGAGTTGCTGTTAATCTCTAATGAGTAGGTCACATGACTATTTTCACTGACGTCAGCATCAACTGCAGACACTGTTTTGATTAGCTCGCCTATCGGACTGTTCTCTTTAACATAAACGTTAATCACGGGGTCTGAGAAGCGAGGAGCATTGTCATTCACATCAGCAACGTGTACAGTAATAACGTTGGTGCTGGAGAGAGGCGGGGTCCCT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1382573 False 2507 lncRNA 0.44 2 7740963 7750114
TU1382576 False 1083 lncRNA 0.45 3 7740963 7756148
TU1382572 False 2564 lncRNA 0.44 2 7747554 7753632
TU1382575 True 1090 lncRNA 0.45 2 7751129 7762287

Neighbor

gene id symbol gene type direction distance location
LOC118938693 NA coding upstream 281913 7455882 ~ 7459050 (+)
LOC110488661 diaph1 coding upstream 355476 7251365 ~ 7385487 (+)
LOC110488659 NA coding upstream 491305 7247779 ~ 7249658 (+)
LOC110488658 LOC106604872 coding upstream 513207 7175176 ~ 7228229 (+)
LOC118938692 LOC106611811 coding upstream 654247 7083183 ~ 7087463 (+)
fgf18a LOC106604790 coding downstream 214463 7976750 ~ 7986393 (+)
LOC110488706 NA coding downstream 563014 8325301 ~ 8335960 (+)
LOC110488707 apbb2 coding downstream 577918 8340205 ~ 8393946 (+)
tlr1 tlr1 coding downstream 732005 8494292 ~ 8497395 (+)
LOC110488712 LOC106604779 coding downstream 742372 8504659 ~ 8509834 (+)
G1210594 NA non-coding upstream 127808 7612783 ~ 7613155 (+)
G1210592 LOC103373949 non-coding upstream 134666 7605988 ~ 7606297 (+)
G1210591 NA non-coding upstream 135956 7604304 ~ 7605007 (+)
G1210587 LOC106604822 non-coding upstream 143343 7596688 ~ 7597620 (+)
G1210582 LOC106604876 non-coding upstream 153420 7581108 ~ 7587543 (+)
G1210682 NA non-coding downstream 21382 7783669 ~ 7783908 (+)
G1210684 NA non-coding downstream 22745 7785032 ~ 7785243 (+)
G1210715 LOC106604617 non-coding downstream 90648 7852935 ~ 7872468 (+)
G1210722 LOC106604815 non-coding downstream 96555 7858842 ~ 7864635 (+)
G1210707 LOC106604614 non-coding downstream 116866 7879153 ~ 7879983 (+)
G1210520 LOC106604879 other upstream 259738 7459848 ~ 7481225 (+)
G1210502 NA other upstream 305795 7432377 ~ 7435168 (+)
G1209572 NA other upstream 984152 6752864 ~ 6756811 (+)
G1209622 NA other upstream 989249 6751352 ~ 6751714 (+)
G1210695 NA other downstream 48844 7811131 ~ 7811872 (+)
G1210708 LOC106604831 other downstream 66536 7828823 ~ 7836843 (+)
G1210736 LOC106596699 other downstream 136559 7898846 ~ 7922226 (+)
G1211167 NA other downstream 1002401 8764688 ~ 8765517 (+)
G1212603 NA other downstream 1862801 9539127 ~ 9677903 (+)

Expression


Co-expression Network