XLOC_031200


Basic Information

Item Value
gene id XLOC_031200
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 32922656 ~ 32927919 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062040
ACTATTCCAGGtctaaaaattaaacttttaatatTCTCTCATACatccattttatttttcaagGTGGATAATTCCAGTTCTTCTGTGGATCATAATAGTTGCCAAGGATAATTAAAAATAGTGTATAttctatttacatatttacaatcTTTTTTTTGATGCGTTTAAAACACAAAGCTGCTATTCCTTCTAGCTTCTGAGTGTGTGACGCCATCTAGTGGACAGTCTTGTTTGCACCCTAGAGTAGAAGCAGAAGTTGTCCAAAAATGTTTAGTCAATAGTTATTGTTCCTAACAAAAACGACATTATACTATAAAATCATTTCTACTTGTGAATTTGCTTGTGCATTCTCCTAATGATATCATCATTCAATCATCTTTACAACCAAATTAAGTGGTGATTTGAAGGGTCAAAAATCGGTCATAGAAGGATCAACCAGTTCTATTCTGATGTAAGGTGgcatcatttgtttaaaaaaggaGGGAGAATTGTGATTCTATTCAAATCCAGGCTCTGCATACAAAGACTTCAAAGCCAGCAGCTCACAGGCACACACTCTGCTGTTGGGATCACCTGAGCTGAAGCAAACTGCTCTTTGATGACACACTGTGGAGTCCCCTTCCTTGCCACTCTTACAAAGAAACCCAAGCCTTTGCATGAGATAGAGAGAGGAAATAGACGGAGTGAAGCCTGTGAAAGATGAACAGAGCACAGCAGTCCGGGTGAGAAAATATCTAAGGCAGGGAGGGAGAGAGATAAAGAGGATAACAAGAAGAAAGGGGAATCTGGGGATACTTGGAAACTCAAGAGGACACTGGAGGATTAAACCAGTTGTCAGTGAG
>TCONS_00062041
CTGAAACTGACATGAACCTACATGCCTGAATTTTATTGCCGAATTTGCTCGGCACCAGTTTAAACCAATTTCCAACACCCTCGGTTCTaatcttttcatttttaagtCAGAGCTAGGCATATTTGTAAGTCTTACATGAACTGCGAGTCTGATATCTTATTAAACACGTTGGGACCAGCTGTACAAGATTATAAACCTGAACCAAAAGTAAATTTATTCAGCGCTCCTACACAAACAGATTTGGCCTCAGGACTTTTTCTCCATAACTGACACCGGTAACAAGCACCATACATTGTCATTCCCGCACACCTGCAGAAGCGCCTTTCTAAAGCAGGTTGCCAAATAACTTtgaaacagttaatttcatgaaAATGCAAATCCCCCATTTTTTAATCATCCCTTTCCTGCAGACCTGAGAGCGAGCGAGACAATGCTGCCGAATGGGACCCTGGGGGAATATCACAGGCTTTGAGGCATGGCTGTTTCAATACAGAACAATTACATTATCCCTCTAATAACTTAGGCTCTGCATACAAAGACTTCAAAGCCAGCAGCTCACAGGCACACACTCTGCTGTTGGGATCACCTGAGCTGAAGCAAACTGCTCTTTGATGACACACTGTGGAGTCCCCTTCCTTGCCACTCTTACAAAGAAACCCAAGCCTTTGCATGAGATAGAGAGAGGAAATAGACGGAGTGAAGCCTGTGAAAGATGAACAGAGCACAGCAGTCCGGGTGAGAAAATATCTAAGGCAGGGAGGGAGAGAGATAAAGAGGATAACAAGAAGAAAGGGGAATCTGGGGATACTTGGAAACTCAAGAGGACACTGGAGGATTAAACCAGTTGTCAGTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062040 False 842 lncRNA 0.38 2 32922656 32923569
TCONS_00062041 True 855 lncRNA 0.44 3 32922656 32927919

Neighbor

gene id symbol gene type direction distance location
XLOC_031199 pole3 coding downstream 31849 32888119 ~ 32890807 (-)
XLOC_031198 NA coding downstream 36782 32885179 ~ 32885874 (-)
XLOC_031197 lrsam1 coding downstream 40494 32865364 ~ 32882162 (-)
XLOC_031196 ptpa coding downstream 108239 32793886 ~ 32814417 (-)
XLOC_031195 NA coding downstream 137856 32782667 ~ 32784800 (-)
XLOC_031201 TUBB4B coding upstream 90845 33018764 ~ 33022014 (-)
XLOC_031202 glipr2 coding upstream 100164 33028083 ~ 33039670 (-)
XLOC_031203 si:dkey-226m8.10 coding upstream 272079 33199998 ~ 33215389 (-)
XLOC_031204 kank1b coding upstream 294205 33222124 ~ 33236637 (-)
XLOC_031205 prkaa1 coding upstream 310626 33238545 ~ 33255759 (-)
XLOC_031194 NA non-coding downstream 185498 32560580 ~ 32737158 (-)
XLOC_031193 NA non-coding downstream 385907 32516671 ~ 32536749 (-)
XLOC_031187 NA non-coding downstream 565654 32342243 ~ 32357002 (-)
XLOC_031209 CU019641.3 non-coding upstream 357607 33285526 ~ 33285597 (-)
XLOC_031210 NA non-coding upstream 358668 33286587 ~ 33286658 (-)
XLOC_031218 BX296533.1 non-coding upstream 1309988 34237907 ~ 34238023 (-)
XLOC_031221 BX530075.3 non-coding upstream 1906059 34833978 ~ 34834093 (-)
XLOC_031229 NA non-coding upstream 2595490 35523409 ~ 35540980 (-)

Expression


Co-expression Network