XLOC_031203 (si:dkey-226m8.10)


Basic Information

Item Value
gene id XLOC_031203
gene name si:dkey-226m8.10
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33199998 ~ 33215389 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060589
ATGAAGAGACTGGCTGCGCGCTGCAATGCTGGTTTGCTAATTCTCTCTCCTCCAGACTGGAGCCAGCCTGGAGACCACAGTCAGTCTCAGGCCATCCACAACGGAGTGTCTGAGGTTATGGAGGAGGAAAGCAACTTAAAGAAACGAAAAAGTGAACAACAAGGTAACCAGGGCTCTGAGACTGGTCAAGAGGGGGTGGAGAAGGTCAAAAAGCGGCGTGGTCGCCCTCCTGCAGAAAAGCTGCCGCCCAACCCTCCCAAACTCACCAAACAGATGAACACCATTGTAGACATGGTCATCAACTACAAGGACACGTTGGGCCGACAGATCAGTAAAGGCTTTGTCCAGCTGCCTTCAAGAAAAGAGGTGCCGGAGTACTACGAGCTCATCCGCAAGCCAGTGGACTTCAGGAGGATCAGGGAGAGAGTGCGTAATCACAAATACAGGTGCATTGCAGACCTGGAAAAGGATATCATGCAGATGTGTCACAACGCTCAGACATTTAATCTGGAGGGATCTCAGATCTTCGAGGACTCCATTGTTTTGAAGTCTGTTTTCGAGAGTGCCAGACAACGAATAGTGGAACTGAGTGAGGAAGACAATGACGCTGTTGGAAGCAGTGAAGCTGATGGTAGCCACCATTTAGATATCAAGGCTCCTGTTTCAGAGACAACAAATCCCAGGCTGGatgaaaaaaaggagaaaaatcaAACTGCTCCTAGTAATTCTAGTTCAAAAGAGGTGGCGCACAGTGATGAAGACATTGGTAAAGATTGTGGAAATACCACAAGAGGACTATTCAACTAG
>TCONS_00060590
CTTtctctctgctctctctctctctctctctctctctctctcaacatcCTAACGGCAATTGATTTGTGTATGAAAAGCTGGGCGCTTTTCGCCCCCCTTTCGGGCTGTGGGTTTTGAGTGATCAGCTGATGAAGAGACTGGCTGCGCGCTGCAATGCTGGTTTGCTAATTCTCTCTCCTCCAGACTGGAGCCAGCCTGGAGACCACAGTCAGTCTCAGGCCATCCACAACGGAGTGTCTGAGGTTATGGAGGAGGAAAGCAACTTAAAGAAACGAAAAAGTGAACAACAAGGTAACCAGGGCTCTGAGACTGGTCAAGAGGGGGTGGAGAAGGTCAAAAAGCGGCGTGGTCGCCCTCCTGCAGAAAAGCTGCCGCCCAACCCTCCCAAACTCACCAAACAGATGAACACCATTGTAGACATGGTCATCAACTACAAGGACACGTTGGGCCGACAGATCAGTAAAGGCTTTGTCCAGCTGCCTTCAAGAAAAGAGGTGCCGGAGTACTACGAGCTCATCCGCAAGCCAGTGGACTTCAGGAGGATCAGGGAGAGAGTGCGTAATCACAAATACAGGTGCATTGCAGACCTGGAAAAGGATATCATGCAGATGTGTCACAACGCTCAGACATTTAATCTGGAGGGATCTCAGATCTTCGAGGACTCCATTGTTTTGAAGTCTGTTTTCGAGAGTGCCAGACAACGAATA

Function

symbol description
si:dkey-226m8.10 Predicted to enable chromatin binding activity. Predicted to be involved in ATP-dependent chromatin remodeling. Predicted to act upstream of or within chromatin remodeling. Predicted to be part of RSC-type complex.

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000060578

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060589 False 807 mRNA 0.48 6 33199998 33215261
TCONS_00060590 True 707 mRNA 0.50 5 33200352 33215389

Neighbor

gene id symbol gene type direction distance location
XLOC_031202 glipr2 coding downstream 160328 33028083 ~ 33039670 (-)
XLOC_031201 TUBB4B coding downstream 177984 33018764 ~ 33022014 (-)
XLOC_031200 NA coding downstream 272079 32922656 ~ 32927919 (-)
XLOC_031199 pole3 coding downstream 309191 32888119 ~ 32890807 (-)
XLOC_031198 NA coding downstream 314124 32885179 ~ 32885874 (-)
XLOC_031204 kank1b coding upstream 6735 33222124 ~ 33236637 (-)
XLOC_031205 prkaa1 coding upstream 23156 33238545 ~ 33255759 (-)
XLOC_031206 ifitm1 coding upstream 42900 33258289 ~ 33259079 (-)
XLOC_031207 kyat1 coding upstream 49453 33264842 ~ 33281156 (-)
XLOC_031208 rpl7a coding upstream 68755 33284144 ~ 33287691 (-)
XLOC_031195 NA non-coding downstream 415198 32782667 ~ 32784800 (-)
XLOC_031194 NA non-coding downstream 462840 32560580 ~ 32737158 (-)
XLOC_031193 NA non-coding downstream 663249 32516671 ~ 32536749 (-)
XLOC_031209 CU019641.3 non-coding upstream 70137 33285526 ~ 33285597 (-)
XLOC_031210 NA non-coding upstream 71198 33286587 ~ 33286658 (-)
XLOC_031218 BX296533.1 non-coding upstream 1022518 34237907 ~ 34238023 (-)
XLOC_031221 BX530075.3 non-coding upstream 1618589 34833978 ~ 34834093 (-)
XLOC_031229 NA non-coding upstream 2308020 35523409 ~ 35540980 (-)

Expression


Co-expression Network