XLOC_031206 (ifitm1)


Basic Information

Item Value
gene id XLOC_031206
gene name ifitm1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33258289 ~ 33259079 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060596
ATCACTGCGTCACAACTTGGTGAATTAAGACAACAATGCAGAGCTACCCGCTTAGAGGAAACCCAATGCAGGATGACAAAACCTGCAACGGTCAGCCAGTGGTTGTGTCCATGCCTGCACAAAAATTAGATGATGATATCATTTTTTCCACATTCAATTTTCACTACTGCAACCCTTGTTGTCTTGGGTTTGGAGCCTTTTACAACTCAGTGAAGGCCAGAGACCGCAGATTGCTTGGAGACTATGCATCAGCGAGCACGTACGGCACTAGAGCTCGACGTCTGAACATCGCTTCTGTTATTCTTGGCGTCCTCTATGGCATTTTACTGATTGTCATCCTTGTCTATGCTTATCAGCTTAGTCGTTTTAGCCACCAATAACCCTTCAAAGAATGTCTGTTTGTATATCAAAGCATTTACTCTGTTTCCATAAAGCATTTTATatctgtttaaaatgtttgttaaggattatttaagtcttttttttttattccatacaGGCACATTATTTACCTTATTTAGAGATGTGCTTGCAtttcctttatttgttttattgttttcttgtTTATATCACACTCATGGTGTGATCTCAGCAATTGTTTAtagaatgaattttttttttttttttatctatatactgtatattttttagtCACACCCTATATAAATATGTGGAGGATGAATAAACACAGAGAACTCTA

Function

symbol description
ifitm1 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including kidney; liver; post-vent region; reproductive system; and tail bud. Human ortholog(s) of this gene implicated in COVID-19. Orthologous to several human genes including IFITM1 (interferon induced transmembrane protein 1) and IFITM3 (interferon induced transmembrane protein 3).

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04662 B cell receptor signaling pathway
ko02000 Transporters
ko04147 Exosome
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-060526-259 Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including kidney; liver; post-vent region; reproductive system; and tail bud. Human ortholog(s) of this gene implicated in COVID-19. Orthologous to several human genes including IFITM1 (interferon induced transmembrane protein 1) and IFITM3 (interferon induced transmembrane protein 3).

Ensembl:

ensembl_id ENSDARG00000093303

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060596 True 700 mRNA 0.37 2 33258289 33259079

Neighbor

gene id symbol gene type direction distance location
XLOC_031205 prkaa1 coding downstream 2530 33238545 ~ 33255759 (-)
XLOC_031204 kank1b coding downstream 21652 33222124 ~ 33236637 (-)
XLOC_031203 si:dkey-226m8.10 coding downstream 42900 33199998 ~ 33215389 (-)
XLOC_031202 glipr2 coding downstream 218619 33028083 ~ 33039670 (-)
XLOC_031201 TUBB4B coding downstream 236275 33018764 ~ 33022014 (-)
XLOC_031207 kyat1 coding upstream 5763 33264842 ~ 33281156 (-)
XLOC_031208 rpl7a coding upstream 25065 33284144 ~ 33287691 (-)
XLOC_031209 CU019641.3 coding upstream 26447 33285526 ~ 33285597 (-)
XLOC_031210 NA coding upstream 27508 33286587 ~ 33286658 (-)
XLOC_031211 C5H9orf78 coding upstream 36599 33295678 ~ 33298352 (-)
XLOC_031200 NA non-coding downstream 330370 32922656 ~ 32927919 (-)
XLOC_031198 NA non-coding downstream 372415 32885179 ~ 32885874 (-)
XLOC_031195 NA non-coding downstream 473489 32782667 ~ 32784800 (-)
XLOC_031194 NA non-coding downstream 521131 32560580 ~ 32737158 (-)
XLOC_031193 NA non-coding downstream 721540 32516671 ~ 32536749 (-)
XLOC_031218 BX296533.1 non-coding upstream 978828 34237907 ~ 34238023 (-)
XLOC_031221 BX530075.3 non-coding upstream 1574899 34833978 ~ 34834093 (-)
XLOC_031229 NA non-coding upstream 2264330 35523409 ~ 35540980 (-)

Expression


Co-expression Network