XLOC_031208 (rpl7a)


Basic Information

Item Value
gene id XLOC_031208
gene name rpl7a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33284144 ~ 33287691 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060605
ATTTTATAACCTTTCTTCAAGTAAACGCGAGCCTCCCGCTTTTGTTCTGTCGCGTACAGATGATGTCACTACCCAAATGTCGCGGTAGTTATATTTCCCACAATCCCTTTCTTCTTCCTTTCCGTCTGAACCAACATGCCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAGGACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCTCACAAGTACAGGCCTGAGACCAAGCATGAGAAGAAACAGAGACTGTTGGCTCGTGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACACCCACTAAAAGACCACCAGTCCTGCGCGcagGTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAGCTGGTGGTGTTCTTGCCTGCTCTGTGCCGTAAAATGGGTGTCCCATACTGCATCGTCAAGGGCAAGGCCAGACTGGGCAGACTGGTGCACAGAAAAACCTGCACCTCCATCGCCTTCACACAGACCAATCCCGAAGACAAAGCAGCTCTTGCTAAACTGGTGGAGGCCATCAAGACCAACTACAATGACAGATATGAGGAGATCCGTCGTCACTGGGGAGGAAATGTCCTGGGTCCCAAGTCAACTGCTCGTATTGCTAAACTCGAGAAGGCAAAGGCCAAGGAGCTGGCCACTAAACTGGGTTGAGCTgtcttgtttaataaatataaaaaatgttca
>TCONS_00060606
CAGCCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAGGACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCTCACAAGTACAGGCCTGAGACCAAGCATGAGAAGAAACAGAGACTGTTGGCTCGTGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACACCCACTAAAAGACCACCAGTCCTGCGCGcagGTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAGCTGGTGGTGTTCTTGCCTGCTCTGTGCCGTAAAATGGGTGTCCCATACTGCATCGTCAAGGGCAAGGCCAGACTGGGCAGACTGGTGCACAGAAAAACCTGCACCTCCATCGCCTTCACACAGACCAATCCCGAAGACAAAGCAGCTCTTGCTAAACTGGTGGAGGCCATCAAGACCAACTACAATGACAGATATGAGGAGATCCGTCGTCACTGGGGAGGAAATGTCCTGGGTCCCAAGTCAACTGCTCGTATTGCTAAACTCGAGAAGGCAAAGGCCAAGGAGCTGGCCACTAAACTGGGTTGAGCTgtcttgtttaataaat
>TCONS_00060607
TTTCCGTCTGAACCAACATGCCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAGGACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCTCACAAGTACAGGCCTGAGACCAAGCATGAGAAGAAACAGAGACTGTTGGCTCGTGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACACCCACTAAAAGACCACCAGTCCTGCGCGcagGTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAGCTGGTGGTGTTCTTGCCTGCTCTGTGCCGTAAAATGGGTGTCCCATACTGCATCGTCAAGGGCAAGGCCAGACTGGGCAGACTGGTGCACAGAAAAACCTGCACCTCCATCGCCTTCACACAGACCAATCCGTGAGTAAAACACAAACACTCAGTTAACTTTCCTTTGCTGCACATCCTACAGCTATGATGTCTGAATTTCTTCACCTGAACAACCATGTGGTTTAAATGAGCTTTTTAACCCTGAGCTAAATGGTTTGCATCTAATCATACATTTGGTGGTTTTTGAATAAGTTTTTGttggt
>TCONS_00060608
CAGCTATGATGTCTGAATTTCTTCACCTGAACAACCATGTGGTTTAAATGAGCTTTTTAACCCTGAGCTAA
>TCONS_00060609
CCAACATGCCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAGGACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCTCACAAGTACAGGCCTGAGACCAAGCATGAGAAGAAACAGAGACTGTTGGCTCGTGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACACCCACTAAAAGACCACCAGTCCTGCGCGcaggtggctttttttttttaattaatttttattttatttattttttaaagattgtttaaacaatataaagttgtaagattttaaaattttcatttcttttctttctcaGGTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAGCTGGTGGTGTTCTTGCCTGCTCTGTGCCGTAAAATGGGTGTCCCATACTGCATCGTCAAGGGCAAGGCCAGACTGGGCAGACTGGT
>TCONS_00060610
TTTCTTCTTCCTTTCCGTCTGAACCAACATGCCCAAGGGAAAAAAGGGTAAGGGGAAGAAGGTGGCACCAGCCCCTTCAGTGGCCAAGAAACATGAGGTCAAGAAAGTTGTGAACCCCCTGTTTGAGAAGAGGCCCAAGAACTTTGGCATTGGTCAGGACATCCAGCCGAAGCGGGATCTGACCCGATTCGTGAAATGGCCACGTTATGTCCGGCTGCAGCGTCAGCGAGCAATCCTGTACAAGCGACTGAAGGTCCCCCCTGCGATCAACCAGTTCACCCAGGCTCTGGACCGCCAGACCGCTACCCAGCTGTTCAAGCTGGCTCACAAGTACAGGCCTGAGACCAAGCATGAGAAGAAACAGAGACTGTTGGCTCGTGCTGAGCAGAAGGCTGCTGGAAAGGGAGATACACCCACTAAAAGACCACCAGTCCTGCGCGcagGTGTGAACACTGTGACCACGCTTGTGGAGAGCAAGAAAGCACAACTGGTCGTTATTGCTCATGATGTGGATCCCATTGAGGTGAGGATCTCAATTTCTACCAAATAAAGTTCTGTTTTAAAGTAGTGGTTGTCTGCAATGATGTCTTGAATTTCTTCACCTGAATTCAAACTGAAGATCAAAATACGAGCTTTTTAACCCTGAGCAACAACCACTCCTGCATCTCAGTAGCTTTTTGTTTCTGGTTTGTAATTTTATAATAGGGCTGAAATCGGggaatgttaattttttttatttccttcttTTAT
>TCONS_00060611
CTGCAATGATGTCTTGAATTTCTTCACCTGAATTCAAACTGAAGATCAAAATACGAGCTTTTTAACCCTGAGCAAC

Function

symbol description
rpl7a Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a).

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process
GO:0000470 maturation of LSU-rRNA biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0022625 cytosolic large ribosomal subunit cellular_component
GO:0005840 ribosome cellular_component
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03010 Ribosome
ko05171 Coronavirus disease - COVID-19
ko03011 Ribosome
ko03009 Ribosome biogenesis

ZFIN:

id description
ZDB-GENE-031001-9 Predicted to enable RNA binding activity. Predicted to be involved in maturation of LSU-rRNA. Predicted to act upstream of or within ribosome biogenesis. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in brain; eye; immature eye; neural plate; and presumptive neural plate. Orthologous to human RPL7A (ribosomal protein L7a).

Ensembl:

ensembl_id ENSDARG00000019230 ENSDARG00000080936 ENSDARG00000082739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060605 False 969 mRNA 0.51 8 33284144 33287691
TCONS_00060606 False 820 mRNA 0.53 7 33284158 33286820
TCONS_00060607 False 816 lncRNA 0.51 6 33284503 33287573
TCONS_00060608 False 71 snoRNA 0.38 1 33284556 33284626
TCONS_00060609 False 692 lncRNA 0.49 5 33284721 33287561
TCONS_00060610 False 750 lncRNA 0.48 5 33284809 33287584
TCONS_00060611 True 76 snoRNA 0.37 1 33284908 33284983

Neighbor

gene id symbol gene type direction distance location
XLOC_031207 kyat1 coding downstream 2988 33264842 ~ 33281156 (-)
XLOC_031206 ifitm1 coding downstream 25065 33258289 ~ 33259079 (-)
XLOC_031205 prkaa1 coding downstream 28385 33238545 ~ 33255759 (-)
XLOC_031204 kank1b coding downstream 47507 33222124 ~ 33236637 (-)
XLOC_031203 si:dkey-226m8.10 coding downstream 68755 33199998 ~ 33215389 (-)
XLOC_031211 C5H9orf78 coding upstream 7987 33295678 ~ 33298352 (-)
XLOC_031212 GARNL3 coding upstream 68734 33356425 ~ 33460959 (-)
XLOC_031213 si:dkey-34e4.1 coding upstream 250098 33537789 ~ 33607062 (-)
XLOC_031214 dab2ipb coding upstream 391868 33679559 ~ 33886495 (-)
XLOC_031215 si:dkeyp-72a4.1 coding upstream 592116 33879807 ~ 33935396 (-)
XLOC_031200 NA non-coding downstream 356225 32922656 ~ 32927919 (-)
XLOC_031198 NA non-coding downstream 398270 32885179 ~ 32885874 (-)
XLOC_031195 NA non-coding downstream 499344 32782667 ~ 32784800 (-)
XLOC_031194 NA non-coding downstream 546986 32560580 ~ 32737158 (-)
XLOC_031193 NA non-coding downstream 747395 32516671 ~ 32536749 (-)
XLOC_031218 BX296533.1 non-coding upstream 950216 34237907 ~ 34238023 (-)
XLOC_031221 BX530075.3 non-coding upstream 1546287 34833978 ~ 34834093 (-)
XLOC_031229 NA non-coding upstream 2235718 35523409 ~ 35540980 (-)
XLOC_031231 BX005476.1 non-coding upstream 2535727 35823418 ~ 35823548 (-)
XLOC_031238 NA non-coding upstream 3534183 36821874 ~ 36829073 (-)

Expression


Co-expression Network