Fish Transcriptome and Expression Database

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model fish

XLOC_031209 (CU019641.3)

Basic Information

Item	Value
gene id	XLOC_031209
gene name	CU019641.3
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	33285526 ~ 33285597 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060612
TGCAGATGATGTGAAGAATATTTGCTATCTGAGTAGTAAATGCGGACAGTTTCCACCAAGATCActgatgca

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000109264

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060612	True	72	snoRNA	0.40	1	33285526	33285597

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031207	kyat1	coding	downstream	4370	33264842 ~ 33281156 (-)
XLOC_031206	ifitm1	coding	downstream	26447	33258289 ~ 33259079 (-)
XLOC_031205	prkaa1	coding	downstream	29767	33238545 ~ 33255759 (-)
XLOC_031204	kank1b	coding	downstream	48889	33222124 ~ 33236637 (-)
XLOC_031203	si:dkey-226m8.10	coding	downstream	70137	33199998 ~ 33215389 (-)
XLOC_031210	NA	coding	upstream	990	33286587 ~ 33286658 (-)
XLOC_031211	C5H9orf78	coding	upstream	10081	33295678 ~ 33298352 (-)
XLOC_031212	GARNL3	coding	upstream	70828	33356425 ~ 33460959 (-)
XLOC_031213	si:dkey-34e4.1	coding	upstream	252192	33537789 ~ 33607062 (-)
XLOC_031214	dab2ipb	coding	upstream	393962	33679559 ~ 33886495 (-)
XLOC_031200	NA	non-coding	downstream	357607	32922656 ~ 32927919 (-)
XLOC_031198	NA	non-coding	downstream	399652	32885179 ~ 32885874 (-)
XLOC_031195	NA	non-coding	downstream	500726	32782667 ~ 32784800 (-)
XLOC_031194	NA	non-coding	downstream	548368	32560580 ~ 32737158 (-)
XLOC_031193	NA	non-coding	downstream	748777	32516671 ~ 32536749 (-)
XLOC_031218	BX296533.1	non-coding	upstream	952310	34237907 ~ 34238023 (-)
XLOC_031221	BX530075.3	non-coding	upstream	1548381	34833978 ~ 34834093 (-)
XLOC_031229	NA	non-coding	upstream	2237812	35523409 ~ 35540980 (-)
XLOC_031231	BX005476.1	non-coding	upstream	2537821	35823418 ~ 35823548 (-)

Expression

Co-expression Network