XLOC_003121 (vgll4b)


Basic Information

Item Value
gene id XLOC_003121
gene name vgll4b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 807153 ~ 815216 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006164
AGGAAAGCCTGCCAACGGGGACTACCGCAAGGACCCCCGGGAGCGCAGCCGCAGCCCCATCGAGCGCATGGCGGCCCCCAGCATGAGTCTGGTTGGTGGGCATCATCTCTACATGCCCAGCCTGGCCCTGGACCAGCCGCTCGCACTGACCAAAAACATGGACTCCAGCCGCAGCATGGGCATCTCTCCTACTGCCAGCCCTGTGGAGCGCCAGCAGAACCGGCCCTCTGTGATCACCTGTGCTCCAGCTAACAACCGTAACTGTAACCTCAGCCACTGCACCGGCTCCCACAACGGCTGCTCCCCCGGCCTGAACGCCAGCTACAGGAGAGCCTCCAACTCGAACACCGCCTGTGACCCTGTGATCGAGGAGCATTTCCGCCGCAGTCTGGGCAAGAACTACAAGGAGCCCGAGCCCGTCACAAACTCCGTGTCCATCACCGGCTCGGTGGACGACCACTTCGCCAAGGCTCTGGGGGAAACGTGGCTGCAGATCAAGGCTAAAGGAGGCTCCAGCTCCCCGGACGCCTCTCCAAACACACACATGGTGAACCACAATCACTCCCCGTCCCTGGTGTCTTGAAGACaggaccacaaacacacacacacacacgcatgattAGCAGCGCAGACGTATCGCTAATGTACATACCACCAGGACGAGCTCCTAAACTCTCCAAATCTGCTTATTTTACTGCTTTTCTAAGTATGctagtgtactttttttttttttagcattatgGGATGCCCATATCTTTACAGAcagcttttattttgtttgtttgtttggttcttGAGATttgaaagaaaagaaatcagcCAGATATGATCTAACCATCTGCCTCAGATACCAAAGAAAACGCTGATGCAAACCTTTTTTACCCACAAGCCATTGCAAGCCGTTCTGTCTGTggcatgctctctctctctctctctctctctcccggtgGAGCCTGACTCTGTATGTGTATACTTGAAGACAAACAAAAGCAGAGAAACGAAAGCGGAGGGCCTGGACTGATTTTgcactatggatggatggaggtcGTGTCAGTttagtgtcacacacacacacacacacacacatgttagaTGTTCAGAAATGGCTCATGCAGACAGGAAGTGATCTCTTTTTATGGTGTTTATGGGAGAAAGctgatcttattttattatttcggATCTGGCACTTGACATTAGTCTCTCCGGTGCTGGACCGCGGCAGACGTGGGCATTCTTCTCGTTTTGCGTTGGTTCGTTTGTTGGTTATTTCCTCCAGGCACTGTGGTTTGAGTAGAGTAGCCGGTTTAAGGTTAAGCTAGTGCTTTATAcgtgcatgtttttaaaatagctgGTATCTATTATTGTGTAGACATTTCAATCGTAATACTTTTACTTCTCTCTCTTTATTCAGATTCGACTTTATTTTTGTCAGTAACAGTCCTAGATAAACTTACTGCTGGTACAGTTGTACTCCATATTATTCTCTTCTAGTCATTATTGATGGTGGAAGCTGCCAGATACAGAGAGATCCGCCTCGGGACAGGCCGTCTATATATGAACGCTGGGCTTTTGTATAGTTGTTAATGGGTGGTTGAGGACGCACGACTCAAACTGCAGCAGCAGCTCTAGATGACTCTGCTGGAGCGCTGACAATCTACTACAACGGCAAGCGCATGCGTGCaggtgtgtgtggctgtgtgcatgcatgtgcatccttgtgtgtgtgtggttttgtcCATGCGTGCATTCGTTCATGTTGCGTGCAAGTCTGTGTGTATGCGtgctagggttgggcgatgtcgaccaatttggtaCGATGTCTAatcattgcgatggacgatggcgtTGTTGTCGTAGGTGgtggtaaattaattatttatgaataattaattaattcataacgaattaattaattgtagcctaccgtttcaactagctgagccgcatggtctttgttttacccataccTAGGCCCACCCTGAATCTGCACACGCAGAATTAGCCAGAATTAGCCTTATTCTGTTTACTCACTTGTGGAAATttagatttattcagtttttacattaattccagtaatattattgactaaaatgaaaatatttatatgatttatttacaatatagtttgtaaagtaatgttttctgtcttttagtagggATATTATATGAgacatttgctttgtttaccataTAAACTGgacctaattggatttgcattgtaaacattaaatacaaggtaaaaatgtattacttctTAGTTCATATATTACGGTTTTAGTtgtactcccaaaatcattcagcataaatctgcagatttttcacAACATTTTGtgcagaaatagctaaaaatgtccacagattctgtctgaccctgcccataaccaaatcataaatgaataaagatcaGTCACACAGATCACTTTTcctgcaggactctggcatgaataggagTGATCTGTGTCGGTATAATGGCGTCCACacacttggttggtaaaaaaagatgcacaaccaacagcaaccaacagcaaccaacagtatctgaggtttacaCTAAAATGACTGAGTACAAGCGTGAAGGCggaagactgaagcagtgtactgacgctgtgacacgtttactgatagattcaaaagagtgAAGAGTCGTTAAATAGAGGCAAGATGAGTTAAATAGCACcattaacaactatagtgagacaccaTCCAGCGAGACATCCTTTATAAACTGTCCGGcttgcactgctctctggggtttgtgctcaaagcacctgctgactgcctggagctctgacgtgcgcatgccagagtgtgtgtgtgtggtcagcagtatagtgtggatggagagctgTTCAGGAATGCTATGTGTAGGCCAGTATCAGATTCTGACGGTAtgggtatgataaccttggatataaatatcacggtttcatagTATTGAGATTGCTGCtctaatatattctttttaaatgtctggctaaaaaacaaaaccttttacccttttgtacacaatatattttaatttgagaaatatttatactattttggagcagtaaacaggtcaggctgaataattcagttgaattattgacttctgttttcatttgtttctaaaacttttttACCATTTGAAACGGCATCTAAAGctgttttctgctggagatacagcTGTcctaaaaaccaaacaaaacaaaacaaatgtaaagcAAAATCTTACTCGTATACCTCAGGAACATTTTGActcttttaaaaccttgacttttccaaactacgGTATACCTTCATCACGGTTGCCTAGCTAGGTGAAActccagtgtggatgtggatcgttttcattctatcATGCCATCGTGTATTTCTCAAGAACATGTTGCTGCTGTAACGGTGGAGGATCGGTATACCGGCTCAGcattgtctatcgacccaaccctagtgTGGTCATGTATGTCCATGTAGGGTTGCTCGATACGGGAATTTGGTAGCAATCAACACTGAAATTTTAAACTCGTCCATTtcacactaacatttgagcactgttgactgcgtttttaaacagcactgattggctgttgtgttcacatgctcaacagaaatgactgtgattggcagtgatcatcagttcactgaactcgccgctgtttactgagtataAACACAGATACAGTCACACGGAGCGTTTCAGAGTcatgattcatcagcggatcactcgtatgtcagcttatagacaaactagCTGATCTTCGTGGCTTTTTAACGCTCTGTGtgcctgtatctgtgtttacactcagtaaacagcggtgagttcagtgaactgatgatcactgccaatcacagtcatttctgttgagcatgtgaacacaacagccaatcagtgctgtttaagaacgcagtcaacagtgctcaaatgttaacGGGAAATGGACGAGCTTCATTTCAGTGCGATTGGTTCCCAATTCCAGTATCAAGACAACACTATGTCCATGTGTGCGTGCgcattcattgtgtgtgtgtgtgtgtgcacatctgTGTTGGTGTGTGCATCGGGTGCATGCattcatgcgtgtgtgtgtggggggtggggggtggggggtgcgTGTGCCTGCGTGTGTGCGCTTGCGTGCCTGTGCATGCGTGTTTGAAGTCTGCCATCTTACCTGCTTGTATTTGTTGAGCGCTTGTACGGAAACACAGAACATTCCTCCGCTAGGGCTCGTGCTGCAGGATTATAGTCAGATTAGCTACTAGCTAACGTCTGCAGAAACGGGAGACGCTAACATTCCTTCAGCTCAGATCATCATTATCAGACGATTCACACACTCTCGCGCAGGTTTTCAGATTTTCCTGAATCcgtcacacacacatttcactgCCAGATATCTGCGcagaacaccacacacacacacacacacacacgcacgcacgtacGCACGCACGCTGTAGGTAAATCacttaattaaaaacaacaaaaaaagtttttatatagGAACTATAAGACCATCATTACGCTGTGCGTAACGAATGTACAGAGAACACAAATCGTAGGTATTTTTTGAGGAACAATTAATTTGTTAATGATATGTAGCTATTTAATTTCCCTCGTCCTGTATTGTAATCATGCTCTTTTGTTTTTCTCGGAGTAAAAAAGTTGATCTTTTTTGTTTGTAGTTTTGTCTGTTTAAGGTTAAAGTGCAGGAACACAGTTATTCTATGAACACACACTGCGGTAGTGTAATAATAGCCACTTGTGTATTATTTCGAAGGCTACTGAGTCTCGACACACTTCTGAACGGAGCTTTCGACTGTCTCTGGAGACAATTGAACAAATCTTTCTCCACtccatcattatatatatatatatatgtatgttttctATTGGACGTGCGCTTCCAGGAGAACCAACGTTAGAACAGACGTTCACTGCACCTCTGGATGAGTTGTAAATCTGTATTATACCCTCATTTCATGGCCTCGGAATCAAACAAACTTTTGGCAGGCCATTGTTTTGTACTTTTAAGTAGCCTCAATGAACAATAAAGTGCTCTTAAACCACTGA

Function

symbol description
vgll4b Predicted to enable transcription coactivator binding activity. Acts upstream of or within hippo signaling. Is expressed in several structures, including digestive system; epidermis; forerunner cell group; nervous system; and swim bladder. Orthologous to human VGLL4 (vestigial like family member 4).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0035329 hippo signaling biological_process
GO:0045892 negative regulation of transcription, DNA-templated biological_process
GO:0001223 transcription coactivator binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-2445 Predicted to enable transcription coactivator binding activity. Acts upstream of or within hippo signaling. Is expressed in several structures, including digestive system; epidermis; forerunner cell group; nervous system; and swim bladder. Orthologous to human VGLL4 (vestigial like family member 4).

Ensembl:

ensembl_id ENSDARG00000103730

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006164 True 5050 mRNA 0.44 3 807153 815216

Neighbor

gene id symbol gene type direction distance location
XLOC_003120 tamm41 coding upstream 16849 779754 ~ 790304 (+)
XLOC_003119 vgll4b coding upstream 34694 769623 ~ 772459 (+)
XLOC_003118 FQ311892.1 coding upstream 76230 730807 ~ 730923 (+)
XLOC_003117 timp4.3 coding upstream 88405 714386 ~ 718748 (+)
XLOC_003116 timp4.2 coding upstream 96121 705727 ~ 711032 (+)
XLOC_003122 ppp1r3db coding downstream 594406 1409622 ~ 1412356 (+)
XLOC_003123 acot8 coding downstream 697355 1512571 ~ 1520946 (+)
XLOC_003124 srsf6b coding downstream 706911 1522127 ~ 1530865 (+)
XLOC_003125 ift52 coding downstream 717881 1533097 ~ 1546015 (+)
XLOC_003126 AL935272.1 coding downstream 730901 1546117 ~ 1546231 (+)
XLOC_003250 BX324177.11 misc downstream 10530587 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 10557670 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 10571146 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10602817 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10614177 11429393 ~ 11429689 (+)
XLOC_003112 NA non-coding upstream 262959 543348 ~ 544194 (+)
XLOC_003109 NA non-coding upstream 302324 474380 ~ 504829 (+)
XLOC_003110 NA non-coding upstream 312620 489935 ~ 494533 (+)
XLOC_003107 CR855375.1 non-coding upstream 435713 371322 ~ 371440 (+)
XLOC_003132 NA non-coding downstream 1120468 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 1136415 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 1375405 2190621 ~ 2190730 (+)
XLOC_003139 NA non-coding downstream 1383314 2198530 ~ 2205798 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000057_05442832_05459768 VGLL4 coding CI01000057 null 5442784 ~ 5459768 (-)
rainbow trout (Oncorhynchus mykiss) G658473 NA non-coding NC_048571.1 CM023225.2 85752533 ~ 85755552 (+)
bowfin (Amia calva) G19081 NA non-coding CM030122.1 CM030122.1 50329178 ~ 50331737 (-)