Fish Transcriptome and Expression Database

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model fish

XLOC_031210

Basic Information

Item	Value
gene id	XLOC_031210
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	33286587 ~ 33286658 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060613
TGCAGATGATGTAATGAATATTTGCTATCTTAACAGCAATGCAGACAATCTCCCACCAAGATCGCTGATGCA

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

Ensembl:

ensembl_id

ENSDARG00000116248

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060613	True	72	snoRNA	0.40	1	33286587	33286658

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031209	CU019641.3	coding	downstream	990	33285526 ~ 33285597 (-)
XLOC_031207	kyat1	coding	downstream	5431	33264842 ~ 33281156 (-)
XLOC_031206	ifitm1	coding	downstream	27508	33258289 ~ 33259079 (-)
XLOC_031205	prkaa1	coding	downstream	30828	33238545 ~ 33255759 (-)
XLOC_031204	kank1b	coding	downstream	49950	33222124 ~ 33236637 (-)
XLOC_031211	C5H9orf78	coding	upstream	9020	33295678 ~ 33298352 (-)
XLOC_031212	GARNL3	coding	upstream	69767	33356425 ~ 33460959 (-)
XLOC_031213	si:dkey-34e4.1	coding	upstream	251131	33537789 ~ 33607062 (-)
XLOC_031214	dab2ipb	coding	upstream	392901	33679559 ~ 33886495 (-)
XLOC_031215	si:dkeyp-72a4.1	coding	upstream	593149	33879807 ~ 33935396 (-)
XLOC_031200	NA	non-coding	downstream	358668	32922656 ~ 32927919 (-)
XLOC_031198	NA	non-coding	downstream	400713	32885179 ~ 32885874 (-)
XLOC_031195	NA	non-coding	downstream	501787	32782667 ~ 32784800 (-)
XLOC_031194	NA	non-coding	downstream	549429	32560580 ~ 32737158 (-)
XLOC_031218	BX296533.1	non-coding	upstream	951249	34237907 ~ 34238023 (-)
XLOC_031221	BX530075.3	non-coding	upstream	1547320	34833978 ~ 34834093 (-)
XLOC_031229	NA	non-coding	upstream	2236751	35523409 ~ 35540980 (-)
XLOC_031231	BX005476.1	non-coding	upstream	2536760	35823418 ~ 35823548 (-)
XLOC_031238	NA	non-coding	upstream	3535216	36821874 ~ 36829073 (-)

Expression

Co-expression Network