XLOC_031211 (C5H9orf78)


Basic Information

Item Value
gene id XLOC_031211
gene name C5H9orf78
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 33295678 ~ 33298352 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060614
ATAGACCGCCACCGTTGCGTACAGACGGACGAGGGGTAACGTAACGCTTATCAGTAAATAATTCGACGAGTTTTAAAAACAAGTCATGCCACCAGGTAAAAATTTTAGAAGAAGGAAAGAGGATTCATCCGACGAGGAAGATGATGAAACAAAATTCGTAGTCAGGTCAAAACTGGATGAAGCCAAGGAGCTACAGAGTCTGCGAAAAAGGCAGCATGGAGTGAGCATTGCAACGTTACTTGTTGGAGAGAAGCTTCCTTTAGAGGCTGAGCTTgagGATGACCCATTTAAACTGAAGACTGGAGGTGTTGTTGACATGAAGAAAGTGAAAGACAGAAGCAGAGACATGACAGTGGATGAAAATGACCTCAATCTTGGTACATCCTTTTCTGCCGAGACAAACAGAAGAGATGAAGATGCTGACATGATGAAGTACATTGAGACAGagttaaagaaaaagaaaggcaTGGTGGAGGCAGAGGAGCAGAAGGTAAAGGTGAAGAATCCAGAGGACCTCCTGTATGAGCTTCCAGAGAACATCAACGTCAGCTCTGCCAAAAAGACAGAAGAGATGTTGTCCAATCAGATGCTGAGCGGAATTCCAGAGGTGGATCTGGGGATTGACGCAAAGATAAAGAATATCATCAACACAGAAGAAGCCAAAGCAAAGCTGCTAGCTGAGCAGAGGAATAAGAAGAAAGACAGCGGGACCTCCTTTGTTCCCACAAACATTGCGGTCAATTACGTCCAGCATAATCGCTTCTACCATGAGGATTCAAACGCGCCCCAAAGACGCAACAGAGAAGAGCCTAAAGCCAGGCCATTGCGTGTAGGAGACACAGAGAAACCAGCACCTGAGGCCTCACCACCCAATTTCCGCAAGAGACCCAATAACGAGAAGGCCACAGATGACTACCACTATGAGAAATTTAAGAAAATGAACCGACGATATTAATCCTTCACTAATAATTCAGTTACCATGATGGAGTTTGTTTTTCCTTTCTGTAAACTGAAAGATGTAAATACTTtgtactatatttaaaaaaatgtctctgCTAAATATCTGTAACTTACGATAAGCTTTTTACAATAAAACTTCACCC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000002220

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060614 True 1103 mRNA 0.43 9 33295678 33298352

Neighbor

gene id symbol gene type direction distance location
XLOC_031208 rpl7a coding downstream 7987 33284144 ~ 33287691 (-)
XLOC_031210 NA coding downstream 9020 33286587 ~ 33286658 (-)
XLOC_031209 CU019641.3 coding downstream 10081 33285526 ~ 33285597 (-)
XLOC_031207 kyat1 coding downstream 14522 33264842 ~ 33281156 (-)
XLOC_031206 ifitm1 coding downstream 36599 33258289 ~ 33259079 (-)
XLOC_031212 GARNL3 coding upstream 58073 33356425 ~ 33460959 (-)
XLOC_031213 si:dkey-34e4.1 coding upstream 239437 33537789 ~ 33607062 (-)
XLOC_031214 dab2ipb coding upstream 381207 33679559 ~ 33886495 (-)
XLOC_031215 si:dkeyp-72a4.1 coding upstream 581455 33879807 ~ 33935396 (-)
XLOC_031216 zgc:63972 coding upstream 641863 33940215 ~ 33959868 (-)
XLOC_031200 NA non-coding downstream 367759 32922656 ~ 32927919 (-)
XLOC_031198 NA non-coding downstream 409804 32885179 ~ 32885874 (-)
XLOC_031195 NA non-coding downstream 510878 32782667 ~ 32784800 (-)
XLOC_031218 BX296533.1 non-coding upstream 939555 34237907 ~ 34238023 (-)
XLOC_031221 BX530075.3 non-coding upstream 1535626 34833978 ~ 34834093 (-)
XLOC_031229 NA non-coding upstream 2225057 35523409 ~ 35540980 (-)
XLOC_031231 BX005476.1 non-coding upstream 2525066 35823418 ~ 35823548 (-)
XLOC_031238 NA non-coding upstream 3523522 36821874 ~ 36829073 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000339_07537499_07539857 C28H9ORF78, CUNH9ORF78, CSGR18H9ORF78, CI078, C9H9ORF78, C19H9ORF78, C17H9ORF78, CSSA01H9ORF78, C1H9ORF78, CLG9H9ORF78, C9ORF78 coding CI01000339 null 7537372 ~ 7539857 (-)
bowfin (Amia calva) AMCG00019941 cunh9orf78,LOC107093874 coding CM030127.1 CM030127.1 3207887 ~ 3211163 (-)