XLOC_003122 (ppp1r3db)


Basic Information

Item Value
gene id XLOC_003122
gene name ppp1r3db
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1409622 ~ 1412356 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006165
CCCTGGACCCCAAACAGAATTCCATAGGCTACACAAGCGTGTGAACATTATTGACGGTGCAAATAAGACGCGTCCGCGGTGCAAATTTGGAAACTGAAGTGTTTATATGTGATTATCAGactggagaatgtcttatttgatGCACGGTGGTCTAATAATAATCGTCGGTGTGTGCTTGTTTGGCTTCACCTCCCAGCGGGACCACCGGTTAAATGTCAAACGCGCTCGATCTCCGCGTATTTTATTACAATCTCTCCGGGGAAAGAAGAGCTCTTGTCTACTTTAACATTAGgatttgtgtgcatatgtattcgTTTTAACGGCACGTCACGCGGAGAGTTCTTCGTAAAGTCAGGTGCAAATTACCACTGTCTTCCCCAAGAAACCCCACTGAGCATGGAGTCCCACCCGTACGTCTCAGGACCCGCCTTACAGCTCACAAGTGCATTTGGCGAGCtgtcaaaaccaaacaaaaccttCCATCTGCGCAATATTTACAACCCCAAACCTCCTCCCCAGCGCCCCCCAGTGGCCATACGACCACCCAGCCCTAAAGCAGGATCCGTTCCTCCTCCACAGGATGCTGTGATCCGCCGCCGACTGTCCTGCGAACCCGAGCCCAAACCCATCATGAGGAGAAGAGCCAAATCCCTCTCGTCCTCCAGCGACCGGCAGACCTGCAGGAACATCCAGGTCCGCTTCGTGGACTCTCTCGGCCTGCAGCTGGAAGATGTCAAGTTCTTCAAATCCAGTGAAGATCCACTGGTGCCGGTTCACGTCATCACACGCCTGCTGGCCAGCTCAGAACTGGCCTCCAAGAAAAACCTGGAGCTCTCCTTGCCTTACTTCCAGCCCTCCTTCCCTGATAACATGACCACCGATGTATCTGCGTTCAGCAGACGTTTGTGCCGGCAGAGAGTGTGTCTGGAGCAGGTGTTTTGCTCGGAGCTGGGCATCACTGGAACGGCACAAGTGCTGAATTTGTGCTTCCAGAAGGAGGTCATCGTGCGCTACTCCTTCACCGACTGGAGGAGCAGTGCGGACTGTAGGGCCGGCTGGGTGTGCAGCGTCCGCAGGGGGGATCTGGAGTCCGACGTTTTTCGTTTTCTCCTGCCCGTGCCTCCGTTCATCATGCAGCCGGGCGCCGTGCTGCAGTTCGCCATCTGCTTTCGGGTGCCAGGATCTGAGTTCTGGGACAACAATGATGGGTGTAATTATAAACTGACCTGCCAGACTTACAAGCTGACCGTCCCTAGAGAGTGCGAAGACAGCCTAGTGCATTTCATTTGAGTGTACACTAAAGTtttcacacacagacatacatatgGTGGTTTTGAGGGCTCTCCATAGGCGTAatcagggtgtgaattacaggTTTGGgggagattcattcattcattcattttccttcagcttagtctcttatttatcaggggtcgccaca

Function

symbol description
ppp1r3db Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3D (protein phosphatase 1 regulatory subunit 3D).

GO:

id name namespace
GO:0005979 regulation of glycogen biosynthetic process biological_process
GO:0000164 protein phosphatase type 1 complex cellular_component
GO:0008157 protein phosphatase 1 binding molecular_function
GO:2001069 glycogen binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-110201-1 Predicted to enable glycogen binding activity and protein phosphatase 1 binding activity. Predicted to be involved in regulation of glycogen biosynthetic process. Predicted to be part of protein phosphatase type 1 complex. Orthologous to human PPP1R3D (protein phosphatase 1 regulatory subunit 3D).

Ensembl:

ensembl_id ENSDARG00000076248

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006165 True 1444 mRNA 0.52 2 1409622 1412356

Neighbor

gene id symbol gene type direction distance location
XLOC_003121 vgll4b coding upstream 594406 807153 ~ 815216 (+)
XLOC_003120 tamm41 coding upstream 619318 779754 ~ 790304 (+)
XLOC_003119 vgll4b coding upstream 637163 769623 ~ 772459 (+)
XLOC_003118 FQ311892.1 coding upstream 678699 730807 ~ 730923 (+)
XLOC_003117 timp4.3 coding upstream 690874 714386 ~ 718748 (+)
XLOC_003123 acot8 coding downstream 100215 1512571 ~ 1520946 (+)
XLOC_003124 srsf6b coding downstream 109771 1522127 ~ 1530865 (+)
XLOC_003125 ift52 coding downstream 120741 1533097 ~ 1546015 (+)
XLOC_003126 AL935272.1 coding downstream 133761 1546117 ~ 1546231 (+)
XLOC_003127 mybl2b coding downstream 139247 1551603 ~ 1574656 (+)
XLOC_003250 BX324177.11 misc downstream 9933447 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9960530 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9974006 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 10005677 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 10017037 11429393 ~ 11429689 (+)
XLOC_003112 NA non-coding upstream 865428 543348 ~ 544194 (+)
XLOC_003109 NA non-coding upstream 904793 474380 ~ 504829 (+)
XLOC_003110 NA non-coding upstream 915089 489935 ~ 494533 (+)
XLOC_003107 CR855375.1 non-coding upstream 1038182 371322 ~ 371440 (+)
XLOC_003132 NA non-coding downstream 523328 1935684 ~ 1997410 (+)
XLOC_003133 NA non-coding downstream 539275 1951631 ~ 1952594 (+)
XLOC_003138 mir196c non-coding downstream 778265 2190621 ~ 2190730 (+)
XLOC_003139 NA non-coding downstream 786174 2198530 ~ 2205798 (+)

Expression


Co-expression Network