XLOC_031228 (ttc33)


Basic Information

Item Value
gene id XLOC_031228
gene name ttc33
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 35421766 ~ 35456269 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060650
GGACAAGTCCAAAACATTTGTGAGAAAACGCGAAGCTGTTGCAGAACCACGGTCTGTCATGGTGCAGTGGtgaattattttgcatttatgaacCAGaatggcCTCCTTTGGCTGGAAGCGTAAGGTGGGGGAGAGAGTTTCCAAGCAGACGGTACAGCAGTTTGAGCAGGACTCGGAGCAGGCGGATGAGGATGAAGTTGAGCGAGAGGGAGTTGACTGGCTGCATGTGATCAAACGGAAACGAGAGGTGCTGCTGGAGGACTGCGCTGCTAAAAGCAAGAGACTAAAGGAAGAAGGAGCCCTGCTTGCTGAACAGGACAGGAACTGGGAGGCATTGAAGAAGTGGGACGAGGCAGTTCAGCTCACACCAGAGGATGCCGTGTTGTATGAGATGAAGTCCCAGGTGTTGATCACCCTTGGAGAGGTGTTTCTGGCAGTGCAGTCTGCAGAGATGGCCACCAGACTCCGCCCCATTTGGTGGGAGGCGTGGCAAACCCTGGGCCGTGCTCAGCTAAGTCTTGGAGAAGTGGAACTAGCTGTACGGTCTTTCCAAGTGGCGCTGCACCTGCATCCGTCTGAGCGTCCTCTCTGGGAGGAAGACCTCAACTGGGCTTTAAAGCTCCGAGAGAACCAGCAATCTCTCCGTGAAAAAGCGTCCCAGGTAGATGAAGCCCGAAGGCTCCTTGTGGAAGCTCCCGAGTTAAAAGGCGATTATGATTTTGAAAGCGATGAAGTGATTGAGGCTTGCTCCGCCATGGCTGATAGGCAGAAGCAATATGAGGACTTGAAGAAAAAGGCTGTAGTTGTGGATGCACACGGGGAGGCCAAAGAGATGCTTGTTGAAGGGGATGACAATCCAACTTCCTCCTCACAGAGTGTTTTAATCAAAGCACGAGGACTCTAAGGGAAATGGAAGCTGTTTTTGTGTCGTCTCCTCATTGTATATTATcccatatgatttatttaaatggaaagttcacccaaaaatgaaaacatactCACCCTCTCAAGTGGATCCTACTGtaacatttatgagtttccttttgaAGATatgagatattttaaagaatgcctTTTCATaggtggaaaaacaaatactatagaggtCAGTTGCTACATACAGTACTCAACATTCGAAGTGAATCAAAaacgtttttcaaaattgtcctagcACAGAAATGTGTgctgtttaatagttttaggacaactttggtGAAATGTggtgatccacttcaaatgttgattgctgtttatcaaaataaaatttaaatgactGTGCTGTTTAATAAAGTTCTCATTCCTAGAAAATTTgtacagtacactgaaaaaatatgtctgcaaaatagttgcaaacagtttatatgggtTATAATTAgtataatgtttaacttaattagtatgtttaaatccaaggaatcatctatgaatatttttgaataatttttttcagtttaagcACCAGATTTTCAAGATAATCAAGTTCGTTGAAATCACTTTCATTTCTCCAGCAGGAATATAAACTCATTTCTTTTACTGAAGCATTTTGTGGTTATTGGATTTAGTTTTGATGGTGCTATCCATTGGTTTTTTTAAGATATCAAAATGGCAAAGCAATCTCTACTTAATGTGCCACCTTGATTAGAAATGCCATCTATCCCAATCAGCTTTGTCTCCATGTGAGATGTGTGTTCTCTAGGaatgtactaaaataaaaaatctgggtTGAGGCTGAAAA

Function

symbol description
ttc33 Orthologous to human TTC33 (tetratricopeptide repeat domain 33).

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-040718-480 Orthologous to human TTC33 (tetratricopeptide repeat domain 33).

Ensembl:

ensembl_id ENSDARG00000035406

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060650 True 1735 mRNA 0.42 5 35421766 35456269

Neighbor

gene id symbol gene type direction distance location
XLOC_031227 map1b coding downstream 119966 35270859 ~ 35301800 (-)
XLOC_031226 ptcd2 coding downstream 157249 35253457 ~ 35264517 (-)
XLOC_031225 tnpo1 coding downstream 169005 35202063 ~ 35252761 (-)
XLOC_031224 fcho2 coding downstream 220284 35123662 ~ 35201482 (-)
XLOC_031223 tmem174 coding downstream 312873 35105085 ~ 35108893 (-)
XLOC_031229 NA coding upstream 67140 35523409 ~ 35540980 (-)
XLOC_031230 ophn1 coding upstream 226412 35682681 ~ 35743741 (-)
XLOC_031231 BX005476.1 coding upstream 367149 35823418 ~ 35823548 (-)
XLOC_031232 rxfp2l coding upstream 418816 35875085 ~ 35953472 (-)
XLOC_031233 efnb1 coding upstream 814747 36271016 ~ 36328688 (-)
XLOC_031221 BX530075.3 non-coding downstream 587673 34833978 ~ 34834093 (-)
XLOC_031218 BX296533.1 non-coding downstream 1183743 34237907 ~ 34238023 (-)
XLOC_031210 NA non-coding downstream 2135108 33286587 ~ 33286658 (-)
XLOC_031209 CU019641.3 non-coding downstream 2136169 33285526 ~ 33285597 (-)
XLOC_031200 NA non-coding downstream 2493847 32922656 ~ 32927919 (-)
XLOC_031238 NA non-coding upstream 1365605 36821874 ~ 36829073 (-)
XLOC_031240 NA non-coding upstream 1446877 36903146 ~ 36907379 (-)
XLOC_031242 BX927323.1 non-coding upstream 1478299 36934568 ~ 36943975 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_06444483_06468488 TTC33 coding CI01000039 null 6442364 ~ 6468488 (-)