Fish Transcriptome and Expression Database

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model fish

XLOC_031231 (BX005476.1)

Basic Information

Item	Value
gene id	XLOC_031231
gene name	BX005476.1
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007116.7
NCBI id	CM002889.2
chromosome length	72500376
location	35823418 ~ 35823548 (-)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060656
TTCACTAAATAAAACACAGGGCAGCTAGCTCtcagcaactctcacatggtcgcccactgaagctaagcagggctgtgcccggtcagtacctggatgggagaccacatgggaaagctaggttcctactggaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id

ENSDARG00000083770

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00060656	True	131	rRNA	0.53	1	35823418	35823548

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_031230	ophn1	coding	downstream	79677	35682681 ~ 35743741 (-)
XLOC_031229	NA	coding	downstream	282438	35523409 ~ 35540980 (-)
XLOC_031228	ttc33	coding	downstream	367149	35421766 ~ 35456269 (-)
XLOC_031227	map1b	coding	downstream	521618	35270859 ~ 35301800 (-)
XLOC_031226	ptcd2	coding	downstream	558901	35253457 ~ 35264517 (-)
XLOC_031232	rxfp2l	coding	upstream	51537	35875085 ~ 35953472 (-)
XLOC_031233	efnb1	coding	upstream	447468	36271016 ~ 36328688 (-)
XLOC_031234	zgc:158432	coding	upstream	714987	36538535 ~ 36549024 (-)
XLOC_031235	taf1	coding	upstream	727922	36551470 ~ 36592394 (-)
XLOC_031236	rhogc	coding	upstream	771601	36595149 ~ 36597636 (-)
XLOC_031221	BX530075.3	non-coding	downstream	989325	34833978 ~ 34834093 (-)
XLOC_031218	BX296533.1	non-coding	downstream	1585395	34237907 ~ 34238023 (-)
XLOC_031210	NA	non-coding	downstream	2536760	33286587 ~ 33286658 (-)
XLOC_031209	CU019641.3	non-coding	downstream	2537821	33285526 ~ 33285597 (-)
XLOC_031238	NA	non-coding	upstream	998326	36821874 ~ 36829073 (-)
XLOC_031240	NA	non-coding	upstream	1079598	36903146 ~ 36907379 (-)
XLOC_031242	BX927323.1	non-coding	upstream	1111020	36934568 ~ 36943975 (-)
XLOC_031247	NA	non-coding	upstream	1443396	37266944 ~ 37272311 (-)
XLOC_031249	NA	non-coding	upstream	1656899	37480447 ~ 37483020 (-)

Expression

Co-expression Network