G1216780


Basic Information

Item Value
gene id G1216780
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 12935099 ~ 12935609 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1389408
CGTAAATTTGCTTTCCAAagctaataaacatgtggaaatgtCAGCAGCATTTTGTGTTCCTAGTTGAATTAGTTAGGGAGCGTAAACAAAGTACAAACTTATCTTACattcaaatttcaatagctccttggtcatgtgacctagtgacttcaaacaaggttcagaatgtccactgagtGGGCTTACATATtacacaccctttagtttgtccattttcatctcacacatATTTACATTAATTTTTCCAAATGTAAAACTTCAATAGcaccttggtcatgtgacctaataACTTCAAataaggttcagaatgtccactgactacccttctatattgcacaccctttagtttgtccattttcatctcacatggttttacatgaatttttcagcattttgaatttcaatagctccttggtcatgtgacctagtgacttcaaacaaggttcagaatgtccactccgTGGGCCTACACATTTCACACCCTTTAGTTTATCCATTTTCAtctcaagat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1389408 True 511 lncRNA 0.36 1 12935099 12935609

Neighbor

gene id symbol gene type direction distance location
LOC110488824 LOC105932619 coding downstream 7842 12923946 ~ 12927257 (-)
ran ran1 coding downstream 11279 12919196 ~ 12923820 (-)
stx3a LOC106604672 coding downstream 28251 12888712 ~ 12906848 (-)
kdm2ab LOC106604673 coding downstream 52517 12870797 ~ 12882582 (-)
ankrd13d LOC106604675 coding downstream 64442 12860779 ~ 12870657 (-)
rad9a rad9a coding upstream 18751 12954360 ~ 12960532 (-)
p2rx3a LOC106604801 coding upstream 33189 12968798 ~ 12981689 (-)
ssrp1a LOC106604666 coding upstream 52655 12988264 ~ 13011711 (-)
med19a LOC106604664 coding upstream 175732 13107379 ~ 13114497 (-)
si:dkey-6i22.5 pmf1 coding upstream 179033 13114642 ~ 13116418 (-)
G1216776 NA non-coding downstream 2181 12932649 ~ 12932918 (-)
G1216765 NA non-coding downstream 21234 12913264 ~ 12913865 (-)
G1216761 NA non-coding downstream 27090 12907774 ~ 12908009 (-)
G1216741 NA non-coding downstream 28346 12870710 ~ 12906753 (-)
G1216447 NA non-coding downstream 87807 12847057 ~ 12847292 (-)
G1216787 NA non-coding upstream 14365 12949974 ~ 12951236 (-)
G1216788 NA non-coding upstream 25491 12961100 ~ 12961452 (-)
G1216791 LOC106604669 non-coding upstream 31031 12966640 ~ 12967986 (-)
G1216805 NA non-coding upstream 68710 13004319 ~ 13005322 (-)
G1216842 NA non-coding upstream 126233 13061842 ~ 13068146 (-)
G1216443 NA other downstream 92346 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 106447 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 366434 12563911 ~ 12568719 (-)
G1216013 NA other downstream 456632 12478019 ~ 12478467 (-)
G1215447 NA other downstream 958322 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 748175 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1621224 14542673 ~ 14642681 (-)
G1218808 NA other upstream 2058211 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2382184 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4462732 17395671 ~ 17399280 (-)

Expression


Co-expression Network