XLOC_031236 (rhogc)


Basic Information

Item Value
gene id XLOC_031236
gene name rhogc
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 36595149 ~ 36597636 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060663
ACCCGTTGAAGAATGAGCCAGTGAGAGAAAAGGACTGCGATTCACACAGAAGATTGTGTTTTAATGACCTTAAATTATGTGCCTTTGAAAGATTTTCGAGACTTTCGATGTGTGTTTAGGCTTTGTAAAGCTGTTGCGCGAAGTTACAGGCCTCAGGGAGTTGTTTGCCTGTGTTTAGTAACTGATTAATGTGAGGCTCATCCGCTAACGTTAGTCGGTTAGCAAAGCGCCTTTGCCGCTGCGATGATGGAAACTTGAGCAGCTCAAATCAAACACTCAGCGAGCTCTCCAGACCACCCAAACACAGCATCATAATGCAGACCATAAAGTGTGTTGTTGTTGgtgatggtgcagtgggaaaGACCTGCCTGTTGATCTCCTACACCACCAATGCCTTCCCAGACGAGTACATTCCTACAGTGTTCGACAACTACAGCACTCAAACCTGTGTGGACGGCCGTGCTGTCAGCCTCAACCTGTGGGACACCGCCGGTCAGGAGGAGTACGACCGCCTGCGAACCCTCTCCTACCCGCAGACACACGTCTTCATCATCTGTTTCTCTGTGGCTAGTCCTTCCTCTCACGCCAACGTCAGGCATAAATGGCACCCGGAGGTCTGCCACCACTGTCCTGGCGTACCTGTGCTGCTGGTGGGCACCAAGAGAGACCTGCGAGGGGACAAGGAGACCCTGGAGAAGCTGAAGGAGCAGGGGATGAGTCCGACCACTCCACAGCAAGGCAGTGCACTGGCCCGCAGCATCGGGGCGGTGCGATATCTGGAGTGCTCGGCCCTTCTCCAGGAGGGCGTCCGAGAGGTCTTCAACGAAGCAGTTCGGGCTGTTCTCTACCCCAACGCCAAGAAGCACACCAAAAAATGTGTGCTGCTATAACAACGTGAgggtgtgcgtgtgagagagattTTATGAAGGGTGGAATGTAAGTTAGTCATGTGATGGTCTCTGCAAATGGTTGTTGCTACCACTTTTTGTCCGTATCTCTACACTACAGTTAGCAATAGGTGCACAGGCTGTGATTGAGGTGattgagagagagaatgtgtatgtgtgtgtgtgagtgattgtgTATTTGTATTGTAACTTTACATATCACCATAGTCAGGCAGATAAGGCAGTGGATTTGTCTAAAGGACTACAGGCATCTTCAACATCTGCCTTCTTATAATGCCTTAAAACCCCAGTGTAACTTTAGGAATCACTCAGAGGATATTTCTTGCACCAAAGTGTAAATGTGACTGGAGGTCTTATAAAGGTGCTGTCTTTCCCTGGCCGCGTAAGTAAAACAATGAGGGCTCGCAGTCTTCCTTTTAGAGTCCCTGTGGCCTATAGGTTTGATGGCCTACTCTTACCACAACGTGCCATGTTTGCCTGTGTTGCTGCCTGTTAATGATCTCTGACCTTTCTAGGGTTGATCGACTTTTAAATCAGGAAACCCTCAGCGTGCCTTTTGGGGCTCGACCCTTACTCAGCCGTTCCTGACATCTCACAAACTCTTTCCTCTGGGCTTATTTCATCTAGGGTGCTACTTAGGGTGCCAGTTGACATCTATTTTCTGGAAAGGGCTGCTGAAAGTTTGCAGAACGCTGCCGTAGCTCACCTGCCTCCTCTTAGAGATGCAAATGAAGGGATATAGAGCTGTTTTATATCACTCTTGGGGTAGAAATGAAGATCTTTCCTTTTGGCTTGGTGTGTGCCTCACAATTCCCAACCGTTATTGAATCTGAAGTGCCACTAATATTTGTATCATTTTGTATTTTATCATGAATGTTAATCCACTCCTGTAAAGTGCCCTAATATAAACTGATGCCAGAGATAAACTTACATTGAACATCCAGGCTGTGGTTAATGTACACAAACACTCAGAACATTCAGGTTTCATTTGGGtccacatttacattttatatattgaaTGTCTACCTTTTGTATAATAAACATCATCCGTTTCTTTTACAGCCAAAGGCTGGTTCCTCGACCGTTCTCTGATTAGGACatcagtaacgcaccaaaaattggctttattttgtattaaagctgtttttatttcttgAAACTGTCATTATCTTTAAGAATATACCTCCACTTGCATGAGAAAATAAACcagttttaaagtaaaacatt
>TCONS_00060664
GTGTCCCACAATGTCGTCTCCGTTACCCGTTGAAGAATGAGCCAGTGAGAGAAAAGGACTGCGATTCACACAGAAGATTGTGTTTTAATGACCTTAAATTATGTGCCTTTGAAAGATTTTCGAGACTTTCGATGTGTGTTTAGGCTTTGTAAAGCTGTTGCGCGAAGTTACAGGCCTCAGGGAGTTGTTTGCCTGTGTTTAGTAACTGATTAATGTGAGGCTCATCCGCTAACGTTAGTCGGTTAGCAAAGCGCCTTTGCCGCTGCGATGATGGAAACTTGAGCAGCTCAAATCAAACACTCAGCGAGCTCTCCAGACCACCCAAACACAGGACTCCTGTGCCAGGCATCATAATGCAGACCATAAAGTGTGTTGTTGTTGgtgatggtgcagtgggaaaGACCTGCCTGTTGATCTCCTACACCACCAATGCCTTCCCAGACGAGTACATTCCTACAGTGTTCGACAACTACAGCACTCAAACCTGTGTGGACGGCCGTGCTGTCAGCCTCAACCTGTGGGACACCGCCGGTCAGGAGGAGTACGACCGCCTGCGAACCCTCTCCTACCCGCAGACACACGTCTTCATCATCTGTTTCTCTGTGGCTAGTCCTTCCTCTCACGCCAACGTCAGGCATAAATGGCACCCGGAGGTCTGCCACCACTGTCCTGGCGTACCTGTGCTGCTGGTGGGCACCAAGAGAGACCTGCGAGGGGACAAGGAGACCCTGGAGAAGCTGAAGGAGCAGGGGATGAGTCCGACCACTCCACAGCAAGGCAGTGCACTGGCCCGCAGCATCGGGGCGGTGCGATATCTGGAGTGCTCGGCCCTTCTCCAGGAGGGCGTCCGAGAGGTCTTCAACGAAGCAGTTCGGGCTGTTCTCTACCCCAACGCCAAGAAGCACACCAAAAAATGTGTGCTGCTATAACAACGTGAgggtgtgcgtgtgagagagattTTATGAAGGGTGGAATGTAAGTTAGTCATGTGATGGTCTCTGCAAATGGTTGTTGCTACCACTTTTTGTCCGTATCTCTACACTACAGTTAGCAATAGGTGCACAGGCTGTGATTGAGGTGattgagagagagaatgtgtatgtgtgtgtgtgagtgattgtgTATTTGTATTGTAACTTTACATATCACCATAGTCAGGCAGATAAGGCAGTGGATTTGTCTAAAGGACTACAGGCATCTTCAACATCTGCCTTCTTATAATGCCTTAAAACCCCAGTGTAACTTTAGGAATCACTCAGAGGATATTTCTTGCACCAAAGTGTAAATGTGACTGGAGGTCTTATAAAGGTGCTGTCTTTCCCTGGCCGCGTAAGTAAAACAATGAGGGCTCGCAGTCTTCCTTTTAGAGTCCCTGTGGCCTATAGGTTTGATGGCCTACTCTTACCACAACGTGCCATGTTTGCCTGTGTTGCTGCCTGTTAATGATCTCTGACCTTTCTAGGGTTGATCGACTTTTAAATCAGGAAACCCTCAGCGTGCCTTTTGGGGCTCGACCCTTACTCAGCCGTTCCTGACATCTCACAAACTCTTTCCTCTGGGCTTATTTCATCTAGGGTGCTACTTAGGGTGCCAGTTGACATCTATTTTCTGGAAAGGGCTGCTGAAAGTTTGCAGAACGCTGCCGTAGCTCACCTGCCTCCTCTTAGAGATGCAAATGAAGGGATATAGAGCTGTTTTATATCACTCTTGGGGTAGAAATGAAGATCTTTCCTTTTGGCTTGGTGTGTGCCTCACAATTCCCAACCGTTATTGAATCTGAAGTGCCACTAATATTTGTATCATTTTGTATTTTATCATGAATGTTAATCCACTCCTGTAAAGTGCCCTAATATAAACTGATGCCAGAGATAAACTTACATTGAACATCCAGGCTGTGGTTAATGTACACAAACACTCAGAACATTCAGGTTTCATTTGGGtccacatttacattttatatattgaaTGTCTACCTTTTGTATAATAAACATCATCCGTTTCTTTTACAGCCAAAGGCTGGTTCCTCGACCGTTCTCTGATTAGGACatcagtaacgcaccaaaaattggctttattttgtattaaagctgtttttatttcttgAAACTGTCATTATCTTTAAGAATATACCTCCACTTGCATGAGAAAATAAACcagttttaaagtaaaacatt

Function

symbol description
rhogc Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton.

GO:

id name namespace
GO:1902622 regulation of neutrophil migration biological_process
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0043652 engulfment of apoptotic cell biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0016601 Rac protein signal transduction biological_process
GO:0030865 cortical cytoskeleton organization biological_process
GO:0030031 cell projection assembly biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0008045 motor neuron axon guidance biological_process
GO:0008360 regulation of cell shape biological_process
GO:0007163 establishment or maintenance of cell polarity biological_process
GO:0042995 cell projection cellular_component
GO:0005856 cytoskeleton cellular_component
GO:0005886 plasma membrane cellular_component
GO:0005938 cell cortex cellular_component
GO:0031410 cytoplasmic vesicle cellular_component
GO:0031982 vesicle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0019901 protein kinase binding molecular_function
GO:0000166 nucleotide binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3402 Predicted to enable GTP binding activity; GTPase activity; and protein kinase binding activity. Predicted to be involved in several processes, including Rac protein signal transduction; cytoskeleton organization; and engulfment of apoptotic cell. Predicted to act upstream of or within small GTPase mediated signal transduction. Predicted to be active in several cellular components, including cell cortex; cytoplasmic vesicle; and cytoskeleton.

Ensembl:

ensembl_id ENSDARG00000028401

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060663 False 2135 mRNA 0.46 2 36595149 36597612
TCONS_00060664 True 2174 mRNA 0.46 2 36595149 36597636

Neighbor

gene id symbol gene type direction distance location
XLOC_031235 taf1 coding downstream 2755 36551470 ~ 36592394 (-)
XLOC_031234 zgc:158432 coding downstream 46125 36538535 ~ 36549024 (-)
XLOC_031233 efnb1 coding downstream 266461 36271016 ~ 36328688 (-)
XLOC_031232 rxfp2l coding downstream 641677 35875085 ~ 35953472 (-)
XLOC_031231 BX005476.1 coding downstream 771601 35823418 ~ 35823548 (-)
XLOC_031237 BX005407.1 coding upstream 43564 36641200 ~ 36674139 (-)
XLOC_031238 NA coding upstream 224238 36821874 ~ 36829073 (-)
XLOC_031239 ckma coding upstream 234443 36832079 ~ 36837846 (-)
XLOC_031240 NA coding upstream 305510 36903146 ~ 36907379 (-)
XLOC_031241 kptn coding upstream 315787 36913423 ~ 36924509 (-)
XLOC_031229 NA non-coding downstream 1054169 35523409 ~ 35540980 (-)
XLOC_031221 BX530075.3 non-coding downstream 1761056 34833978 ~ 34834093 (-)
XLOC_031218 BX296533.1 non-coding downstream 2357126 34237907 ~ 34238023 (-)
XLOC_031210 NA non-coding downstream 3308491 33286587 ~ 33286658 (-)
XLOC_031242 BX927323.1 non-coding upstream 336932 36934568 ~ 36943975 (-)
XLOC_031247 NA non-coding upstream 669308 37266944 ~ 37272311 (-)
XLOC_031249 NA non-coding upstream 882811 37480447 ~ 37483020 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_07165860_07166458 RHOG, RHOGC coding CI01000039 null 7164783 ~ 7166458 (-)