G1216938


Basic Information

Item Value
gene id G1216938
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 13226011 ~ 13227315 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1389599
CTTGGGGTTGTCTGTATCTGTTTTTGGGTGTGTTTCCTtcatcaacacacacacctgattgttgttgttgtcctctaTCTGGTTGGCTGTTGCATCGTTCCCAGAATCCTCCTGGTGGAGTGATACATCGTCCATGGTTTGATGGACTTCCTTTGTCTGTTTGTCCAACTTCTTCTGAAACATCAAGTCAAATCAGACTCTTCCTTTCCTTTATTGAATTGCTCCTGATCATTCAATATCTATGTTCATTCAACGTCCATTCCATCAATCAGTGTAGCCTCAAAGCTCAAAGTTCTAGGCAGaaatctctcttgctctctctctccctctcttttgctctctttctctctctctctctctctctctctctctctctctctttctctctctctctcgctctctctctccgtctctctctgtctctctctctctctctctctctctctctcgcagcagAATGCTAATGTCCTGTAATGTCCA

Function

NR:

description
smoothelin-like protein 1

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1389599 True 480 lncRNA 0.45 2 13226011 13227315

Neighbor

gene id symbol gene type direction distance location
LOC110488839 LOC106604658 coding downstream 12546 13203883 ~ 13213465 (-)
LOC110488837 LOC106604660 coding downstream 51594 13168814 ~ 13174417 (-)
LOC110488836 NA coding downstream 61325 13158680 ~ 13164686 (-)
LOC110488835 LOC106604661 coding downstream 67415 13153679 ~ 13158596 (-)
LOC110488833 LOC106611662 coding downstream 80834 13122200 ~ 13145177 (-)
LOC110488846 LOC106604652 coding upstream 80715 13308030 ~ 13310487 (-)
LOC110487735 LOC106604649 coding upstream 104946 13332261 ~ 13348339 (-)
LOC110488848 LOC106604648 coding upstream 130503 13357818 ~ 13366998 (-)
LOC110488850 LOC106604647 coding upstream 164370 13391685 ~ 13400674 (-)
LOC118938697 NA coding upstream 418520 13645835 ~ 13661276 (-)
G1216906 NA non-coding downstream 23638 13201098 ~ 13202373 (-)
G1216890 NA non-coding downstream 72503 13153276 ~ 13153508 (-)
med19a LOC106604664 non-coding downstream 113626 13107379 ~ 13114497 (-)
G1216909 NA non-coding upstream 16506 13243821 ~ 13316860 (-)
G1217034 NA non-coding upstream 184581 13411896 ~ 13412160 (-)
G1217327 NA non-coding upstream 422283 13649598 ~ 13649849 (-)
G1217335 NA non-coding upstream 437021 13664336 ~ 13664603 (-)
G1216443 NA other downstream 383258 12841496 ~ 12842753 (-)
LOC110488817 LOC105028880 other downstream 397359 12820904 ~ 12828721 (-)
LOC110488811 LOC106604684 other downstream 657346 12563911 ~ 12568719 (-)
G1216013 NA other downstream 747544 12478019 ~ 12478467 (-)
G1215447 NA other downstream 1249234 11964493 ~ 11976777 (-)
LOC110488853 LOC106604605 other upstream 456469 13683784 ~ 13715500 (-)
LOC110488886 LOC106604622 other upstream 1329518 14542673 ~ 14642681 (-)
G1218808 NA other upstream 1766505 14993820 ~ 14994379 (-)
G1219208 NA other upstream 2090478 15317793 ~ 15318160 (-)
asb5a LOC101464329 other upstream 4171026 17395671 ~ 17399280 (-)

Expression


Co-expression Network