XLOC_031239 (ckma)


Basic Information

Item Value
gene id XLOC_031239
gene name ckma
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 36832079 ~ 36837846 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060666
TATCCAAATCAAACTCTTCTTGCTTGGGTGACCCCTATTTCGGCTTGGTGAACAGGATCTGATCCCAAGGACTGTTACCACTTTTGTTGTCTTTTGTGCAGTGTTAGAAACGCAATCATGCCTTTCGGAAACACCCACAACAACTTCAAGCTGAACTACTCAGTTGATGAGGAGTATCCAGACCTTAGCAAGCACAACAACCACATGGCCAAGGTGCTGACTAAGGAAATGTATGGCAAGCTTAGGGACAAGCAGACCTCCACTGGATTCACTGTGGATGATGTCATCCAGACCGGTGTTGACAATCCAGGCCACCCCTTCATCATGACCGTCGGCTGTGTTGCTGGTGATGAGGAGTCCTACGAAGTGTTCAAGGATCTGTTCGACCCCGTCATTTCCGACCGTCACGGTGGATACAAGGCAACTGACAAGCACAAGACCGACCTCAACTTTGAGAACCTGAAGGGTGGTGATGACCTGGACCCCAACTACGTCCTGAGCAGCCGTGTGCGTACCGGACGCAGCATCAAGGGATACGCCCTGCCCCCCCACAACAGCCGTGGAGAGCGCAGAGCTGTGGAGAAGCTGTCTGTTGAAGCTCTGAGCAGCTTGGATGGAGAGTTCAAGGGCAAGTACTACCCCCTGAAGTCCATGACTGATGCCGAGCAGGAGCAGCTGATCGCTGACCACTTCCTCTTTGACAAACCCGTCTCCCCCCTGCTGCTGGCTGCTGGTATGGCCCGTGACTGGCCCGATGCCAGAGGCATTTGGCACAATGAGAACAAGACCTTCCTGGTCTGGGTGAACGAGGAGGATCACCTGCGTGTCATTTCCATGCAGAAGGGTGGCAACATGAAGGAAGTGTTCAAGCGCTTCTGCGTTGGTCTTCAGAGGATTGAGGAAATTTTCAAGAAGCACAACCATGGGTTCATGTGGAACGAGCATCTTGGTTTCGTCCTGACCTGCCCCTCCAACCTGGGCACAGGCCTGCGCGGTGGAGTCCACGTCAAGCTGCCCAAGCTCAGCACACATGCCAAGTTTGAGGAGATCCTGACCAGACTGCGCCTGCAGAAGCGTGGCACAGGTGGTGTGGACACTGCCTCCGTTGGTGGAGTGTTTGACATTTCCAACGCTGACCGTATCGGCTCTTCAGAGGTTGAGCAGGTGCAGTGTGTGGTTGATGGTGTCAAGCTGATGGTGGAGATGGAGAAGAAGCTGGAGAAGGGCGAGTCCATCGACAGCATGATCCCTGCCCAGAAGTAAAGCGGGAGCTCTTCCATTTTTTTCTCgtctttgtctgtttttttacagtccaaCAGCAATGCAGAGGAAAACTGCTGCTCAAAAAGACAGTCTCACCTTTGCACCTgtcttctttccttttttttcccttcTTCTCTAATTTCCATGTCATTTCGCCATCTTTTTTTCCACTTTGTTTCCTATTAAGTCGGTAACATCTTGGGATCAGATACCCGGCGCAGGAGTGAGTGCCTGTTGCTGAGGCTTCACCTCAATTTCAGCCTTGGTTGTAAAAAGTGAATCAATCAAAGTTGTATTTCAATAAAAATACCCCATAAAACA

Function

symbol description
ckma Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in brain; cardiovascular system; eye; and musculature system. Orthologous to human CKM (creatine kinase, M-type).

GO:

id name namespace
GO:0046314 phosphocreatine biosynthetic process biological_process
GO:0016310 phosphorylation biological_process
GO:0005615 extracellular space cellular_component
GO:0016740 transferase activity molecular_function
GO:0005524 ATP binding molecular_function
GO:0016772 transferase activity, transferring phosphorus-containing groups molecular_function
GO:0000166 nucleotide binding molecular_function
GO:0016301 kinase activity molecular_function
GO:0004111 creatine kinase activity molecular_function
GO:0003824 catalytic activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-109 Predicted to enable creatine kinase activity. Predicted to be involved in phosphocreatine biosynthetic process. Predicted to act upstream of or within phosphorylation. Predicted to be active in extracellular space. Is expressed in brain; cardiovascular system; eye; and musculature system. Orthologous to human CKM (creatine kinase, M-type).

Ensembl:

ensembl_id ENSDARG00000035327

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060666 True 1584 mRNA 0.51 8 36832079 36837846

Neighbor

gene id symbol gene type direction distance location
XLOC_031238 NA coding downstream 3006 36821874 ~ 36829073 (-)
XLOC_031237 BX005407.1 coding downstream 157940 36641200 ~ 36674139 (-)
XLOC_031236 rhogc coding downstream 234443 36595149 ~ 36597636 (-)
XLOC_031235 taf1 coding downstream 239685 36551470 ~ 36592394 (-)
XLOC_031234 zgc:158432 coding downstream 283055 36538535 ~ 36549024 (-)
XLOC_031240 NA coding upstream 65300 36903146 ~ 36907379 (-)
XLOC_031241 kptn coding upstream 75577 36913423 ~ 36924509 (-)
XLOC_031242 BX927323.1 coding upstream 96722 36934568 ~ 36943975 (-)
XLOC_031243 h3f3c coding upstream 106687 36944533 ~ 36949476 (-)
XLOC_031244 ftr99 coding upstream 203007 37040853 ~ 37047166 (-)
XLOC_031231 BX005476.1 non-coding downstream 1008531 35823418 ~ 35823548 (-)
XLOC_031229 NA non-coding downstream 1291099 35523409 ~ 35540980 (-)
XLOC_031221 BX530075.3 non-coding downstream 1997986 34833978 ~ 34834093 (-)
XLOC_031218 BX296533.1 non-coding downstream 2594056 34237907 ~ 34238023 (-)
XLOC_031247 NA non-coding upstream 429098 37266944 ~ 37272311 (-)
XLOC_031249 NA non-coding upstream 642601 37480447 ~ 37483020 (-)
XLOC_031250 NA non-coding upstream 754430 37592276 ~ 37603735 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000039_07320926_07323244 CKM, CKM.S, CKMA, CKM2 coding CI01000039 null 7320717 ~ 7324653 (-)
bowfin (Amia calva) AMCG00013588 ckma,LOC101077669,LOC103045415,LOC103141037 coding CM030125.1 CM030125.1 37154267 ~ 37170647 (+)