XLOC_031247


Basic Information

Item Value
gene id XLOC_031247
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37266944 ~ 37272311 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062046
gttatttgttatatcaTCAGATTGATCTGCTATTATTGTATTTGTATGCTGTCAGCTTTAACATATATTCCTTAAAACTGTACATCTATTGTCGTatagattgtctggctgttgtattattttttttgtagtttatgcCTTTTCGGCCCTGTTCAACATTTGCAGTGTCATTTGTTCTTTACATTTTTACTAATATTGTAGCACATTTAACTATTCCAAGTTTATAGATTGTCATCTTATAGAGTATTTATTCATAGCTGTGAAAAATGTGTTGTTAGTATTACAATACAACCAGTCTGGTGACAATAGCAGATGAAACTTTCAAAGAATTTAACCCTGTTGTATTTTACAGATTGGAATGAAAAAAAAGGAATCACAAACCCCAGCAAAAACTGGAAATTTATGGTCAGGAACAGATGAACGTGTGCATCGATGGATGTCCTTCGCAGATGAAAGGGACGGTGATTggtatagagcagtggttcttaaactttttcacctcagaaaaaaattctctctAAATACCACCTAATGATTAGCATCGAAATATAGTAGCATAGAAGGCCTAATTAAtcagccacagctctgcacagttcaagaacaaggcagatttttttataaaataaggtcagacactttaaacattataaatagtttaaacattaacactgtactgtgcttacgtttaataaaaaatgtgtttaaatgttaattaaaattgGCACTGTTCataaaaagtacaataaataaataaataaaatgctgtacTTAAAGGTAAAGTAATAACATATAGTAGAAGACCTGAAAATGtagcttggacctcataaatttATAAGTCATCACTTTCAGAtcatatataaaccattttgaacgatatgttgcatgtacatatgacatatttgtatGGAGGAGACCGGGGATAGTCGTACTTCTATTACATTTACCTATATATCTGTGAGATCTTAAGTGTCTGCTATTAAATGGCATGTACGTTGTTTTTGCAGTGCAAACAGAAAATGTGAACACTTTTTAGTTCCAAACAGGAGCAGTAAAATGTTACAACTCATTCCACAGTCACGGTTAGTTGTAACACACCCCATGATGAGATGTAAACTGAAATGCCAACAAGACTGATCTGCAAAAGTACTTCTCTTGCGCGTATCTGCTTGAGAGCTCCACAATTTTTTAGATTCTCAGCATCTGATGATGTGGTGCACTATACATAATAATCACAACAATGATCATACAGTACAGGGAACAGCCATTGCTGATCACATCGGTGTTATCGTTCCATCAAAGGGTAAAAGAATGTTCAtatattttcaattattattcAGTGACCATTGTGTACCACTAGatggaagcccgcgtaccacactttgagaaccactggtatagatagATAGTCAGGCtttgtctgtgtcaggtttttcctttttcagctaatggagagcaggcagaagagggagactcacaagagaATTGGTGGGAATTTATCTAAAAGAAATGCTGGAGAACAATGGTTGGGTTTTGTTGGGGCTGTCTGTTTTTTTGCAGgttggagtggagcagaagaaggagactcacaaggGGAACAATAGAGATATAGTTTAAGACCTGGAGCTCAGGAAGCAGATTGACAGAGGATGTAGAGGAACAGGGAACCACACCTCAGTAATGACGAGTGCATTGTAATAAATTAGGtactgccttaaatttttaagttgaatcaaattaactttattaaacaatcttaaaattatacaatttaattTTTACAGAGTGTCACAGAAGGCACGGGATTCAGGTGAACAATAGAAACAATGTTTATTTGGCAGGTTTGGAGACTGAAGACATATACCACAGACGGCAAACAGGACGCGGACCAGATCAGGAAACAGGACACACCACTCTAAGAGAGACATGGAAGACGTAACTAAACTCATATCTAAGAATCAACAATGACTGTGtataacaggggtgtccaaactcaatcctgaagagccagtgtcctgcatattttagttccatccccaattaaacacacctgaagcagctaatcaacctttctctaggtatactagaatctttcaggcaggtgtattgaaggaagttggagctaaactatgcaggacactggctctggacacccctggtgtataGGGAGTTCAGTCCTTTCTTTACAAGCGGAGATGCCGGACGCAGTGAATGTGAGTGGAGTCTTTATAGTGCTGTGATGATTGTCAGGTGTGTATCTAATTAGACTCAGGTGAGGTTGCTTATGGTGCTTCAGTGGTTGGAAAACCTGGGCTGCgttcgaaaccgcatacttccatactatatagtacgctaaaatcagtatgcgagccgagtagtatgtacgagttcatagaattcgaaaatcagtatgcgagaagtacccggataacTTACTACTTTCGGCAATattctggagtgtgcatcccatgcacgctgcgctatctcATAATGCCCTGCGAGCGAATACATGAATAGGAGTAAAGCTACACAATTGACGCAGGTATGTCAAGTGACCataacaaaatggcggatgtagtacgtccgaattccattcatacttttcacgttcatactgtacagaacgtacttttctaacggccaagcagtacatttaaattcaaatgcagtacctactgagtagtaggcggtttcggacacagccctgGTCATACTGTGACAGTAAGTGATGGTTGGATACTTGCTTCAGCTAGACAGAGATAGatacagtatttttgtttgtttgtaagatttatttgtatattgctaTCTAATTTAACATTTACAGATTGTTATTTGTTCTATCATCAGTTGTATTTGTATGCTGTCAGCTTTAACACATTTGTAGTTTATGTTGACGACATGTTcaacatttgcatattttaattgttatttgttttattgacagatttactaattattgtaacacattttgaagttatttaaaaactaatttcaagaggatcacaagcttatgattgcttgcagccggtcacgcagtattcaatttatgatttgcCAATTAGAAGATTCCTaggccactataaataccctgttCCATacaacagccatcttcattttgaagaatccctgcttccacccttactcctcctcctttcctagatggatgGCACgttggtccagtggttagcactgttgcctcacagcaagaacctcactggttctagtccttacctaGCCAGCCGAATTTACACGTTCTCTCCGTGCTAACTTGGGTTTTCCCTGgattccccggtttcctcccaccatccatcAACATGGAACTTAAGATagttgactaatccaaattagcaccatagacatgctcctagtaagtagttatcacttaagagcaatcacaatctgttcattagctacttgggcaggggagttctcgagatctacctgagctcaaactcccctctcgccttgcaaatgagagggagccccgggcttgaggatcttatgagctcagggctctcttcctgGACATCATGCCAAACAAGCATTACAATCAATAATCAGCTAAGTGTCAACTCTTGAATATCTATTCTAAGTTTATAGATTGTCATCTTATAGAGTATTTATTTATAGCTGTGAAATATGTTTTGTTAGTGTTAGAACAGAACCAGACTGGAGACAATCATAGAGGAAACTTCCAAAGAATGGGATTAAgattatttagttatttgacaTCTGTTATTGTATTTTGCAGATCGGAATGGACCATATGGAAAAAAAATGGAATCATGCACCTACCAACTACTGGAAATTGATGGTCaggaatgtctttaaaaaaaaatgatgggcGGGTACATCgatggatgtccttccaagatACAGGAGTTGTGGTTGGTATAGATGGTTAAATAGGCCTTGTCTGTGttaggtttttctttttcaggtaatggagagagaaagggagaagagggagactcacaagagcatcaatGGAGATATACTTTAAGACCTGGAGCTCAGGAAGCAGGTAGAACTGCTTAAACAGACTAAACAATGGAGTTAGTttccaaaaaaatgtattaaaataattaaatacttgatatctttctctttggcagattgGTATGGAGCAGGTGGAGAAACAGGGAAACACACGTCAGTAATGACAAGTGTATCATAATAAATTAGGTACAAATGTTTAAATTGAATCAGattaacttaaaacatttaaacttatATACTTGAATTTTTACCGACTAAATTATGTTAATATctccgatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagtattgAACAAGAAGGTAGAGCTCCAttgatgttttctttgtcttttacagagtgGAGTGAAGAATCTAGGGAATCGCACATCTCAGCAATGATAAGACTCTGATGGTCAGGTATCACCTATTGACGTCAGATGTCCAAGaagaagggggtggtggtgggcttgaGCCCGTCTCAGACTACAGGGGTTTTAAAATCCTATCTGATAATGAAATCTAGTTGCAGCAGACACATTAGGAGAATCTTCTGCGAATTTATTAGCCTACCTCAAATCTTGAACATGCACACACTAAAAGATACGAAAATCGATTATCGGTTGTGCAGACAaaagtctaataataataataaaaataggcttATAATCTCTATCATGCCGCAATGTGCTGTGCTTTCTAGTTCAAAAGCAAAATTGTGACCTGTTGCACTgcctatattcattcattcattcattttctttttgactt
>TCONS_00060682
tggagagagaaagggagaagagggagactcacaagagcatcaatGGAGATATACTTTAAGACCTGGAGCTCAGGAAGCAGattgGTATGGAGCAGGTGGAGAAACAGGGAAACACACGTCAGTAATGACAAGTGTATCATAATAAATTAGagtgGAGTGAAGAATCTAGGGAATCGCACATCTCAGCAATGATAAGACTCTGATGGTCAGGTATCACCTATTGACGTCAGATGTCCAAGaagaagggggtggtggtgg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDARG00000104190

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062046 False 5200 lncRNA 0.37 3 37266944 37272311
TCONS_00060682 True 258 processed_transcript 0.45 3 37267247 37268199

Neighbor

gene id symbol gene type direction distance location
XLOC_031246 lrch2 coding downstream 2449 37132016 ~ 37264495 (-)
XLOC_031245 il13ra2 coding downstream 149166 37101393 ~ 37117778 (-)
XLOC_031244 ftr99 coding downstream 219778 37040853 ~ 37047166 (-)
XLOC_031243 h3f3c coding downstream 317468 36944533 ~ 36949476 (-)
XLOC_031242 BX927323.1 coding downstream 322969 36934568 ~ 36943975 (-)
XLOC_031248 wdr44 coding upstream 44372 37316683 ~ 37341044 (-)
XLOC_031249 NA coding upstream 208136 37480447 ~ 37483020 (-)
XLOC_031250 NA coding upstream 319965 37592276 ~ 37603735 (-)
XLOC_031251 NA coding upstream 436391 37708702 ~ 37711850 (-)
XLOC_031252 AL935065.1 coding upstream 545559 37817870 ~ 37820878 (-)
XLOC_031240 NA non-coding downstream 359565 36903146 ~ 36907379 (-)
XLOC_031238 NA non-coding downstream 437871 36821874 ~ 36829073 (-)
XLOC_031231 BX005476.1 non-coding downstream 1443396 35823418 ~ 35823548 (-)
XLOC_031229 NA non-coding downstream 1725964 35523409 ~ 35540980 (-)
XLOC_031259 BX640520.1 non-coding upstream 763026 38035337 ~ 38038217 (-)
XLOC_031269 NA non-coding upstream 977733 38250044 ~ 38255744 (-)

Expression


Co-expression Network