XLOC_031249


Basic Information

Item Value
gene id XLOC_031249
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37480447 ~ 37483020 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062047
TAGGAAAAAGAGAGATGTTTTCTGCATGTCTGTGCTGATCACTGGATGTGGGACAAGATTTTTACCAGTACGAGGATGGAGATGGATGACCAGATGGACCAGGGGGACCGGAGGATAAAGCAGAGAATCCAGGCACACAGATATGCGGATAGAGGATCGACGACAACCACAGGAGGGACCAGGAGAAACCAGGAGGGAGAGATGCAGACACTGGAAATCGAGAGAAGGAAGTAAATCTAGaactagataaaaaaaatactgaccATAGAGATAGTGCTGTCTTCCGTAATAGCAAAGAGGCAGGACACTGAGTGAGGGCTGGTGATTGTTCTTATGGTGCGGGAGTGATGATTGGGAATGACGTGTTTATGATTAGAATTCAGATGACAGTGATCGAGGTGACTGGGAGTAGGGATAACCTGGCCTGGCTGTGGCAGTATTAAAGTGAAGAAAGATATTATTAAAGCTGTCATGGCTGCATGGCAATCATGTTTATGTCAGATTTATGACAAGGTATGCTGTCTttataatgtcaagttgtcataacaaaggtAATTCCAGGTTGTGATGTTTTTTAAGTCACG
>TCONS_00062048
TCAGGAGTTACCATGCTAGTTAATGGTAAACAGGTTTTAATAAACTTCTAGGACATATCTGTGCCTAATTTTGAGGAAACACAGTGACATTTACATGTACAGCTGACAAAAGAGTTAACAGGATATTAACAGATCATCTGTTGCCGGGAATGGGATCATCTGCAGAGGAAGAGTGTTCTGAAACACCGGACATAGACGATGACTTCTGCGGTATCAAATGATGGAGATGGATGACCAGATGGACCAGGGGGACCGGAGGATAAAGCAGAGAATCCAGGCACACAGATATGCGGATAGAGGATCGACGACAACCACAGGAGGGACCAGGAGAAACCAGGAGGGAGAGATGCAGACACTGGAAATCGAGAGAAGGAAGTAAATCTAGaactagataaaaaaaatactgaccATAGAGATAGTGCTGTCTTCCGTAATAGCAAAGAGGCAGGACACTGAGTGAGGGCTGGTGATTGTTCTTATGGTGCGGGAGTGATGATTGGGAATGACGTGTTTATGATTAGAATTCAGATGACAGTGATCGAGGTGACTGGGAGTAGGGATAACCTGGCCTGGCTGTGGCAGTATTAAAGTGAAGAAAGATATTATTAAAGCTGTCATGGCTGCATGGCAATCATGTTTATGTCAGATTTATGACAAGGTATGCTGTCTttataatgtcaagttgtcataacaaaggtAATTCCAGGTTGTGATGTTTTTTAAGTCACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062047 False 584 lncRNA 0.44 2 37480447 37482727
TCONS_00062048 True 729 lncRNA 0.43 2 37480447 37483020

Neighbor

gene id symbol gene type direction distance location
XLOC_031248 wdr44 coding downstream 139403 37316683 ~ 37341044 (-)
XLOC_031247 NA coding downstream 208136 37266944 ~ 37272311 (-)
XLOC_031246 lrch2 coding downstream 215952 37132016 ~ 37264495 (-)
XLOC_031245 il13ra2 coding downstream 362669 37101393 ~ 37117778 (-)
XLOC_031244 ftr99 coding downstream 433281 37040853 ~ 37047166 (-)
XLOC_031250 NA coding upstream 109256 37592276 ~ 37603735 (-)
XLOC_031251 NA coding upstream 225682 37708702 ~ 37711850 (-)
XLOC_031252 AL935065.1 coding upstream 334850 37817870 ~ 37820878 (-)
XLOC_031253 arhgap35b coding upstream 381685 37864705 ~ 37881345 (-)
XLOC_031254 si:ch211-139a5.9 coding upstream 401002 37884022 ~ 37886077 (-)
XLOC_031242 BX927323.1 non-coding downstream 536472 36934568 ~ 36943975 (-)
XLOC_031240 NA non-coding downstream 573068 36903146 ~ 36907379 (-)
XLOC_031238 NA non-coding downstream 651374 36821874 ~ 36829073 (-)
XLOC_031231 BX005476.1 non-coding downstream 1656899 35823418 ~ 35823548 (-)
XLOC_031259 BX640520.1 non-coding upstream 552317 38035337 ~ 38038217 (-)
XLOC_031269 NA non-coding upstream 767024 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 1131848 38614868 ~ 38633719 (-)

Expression


Co-expression Network