XLOC_031251


Basic Information

Item Value
gene id XLOC_031251
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37708702 ~ 37711850 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00062049
TTGtttcttttcaaatcatgtttttattCCTAATATTAGATGTAGATACACAAGTCAACAAACAAGTCTTTGTTGTTTAGATCAGTAATGAAAAATGCTCCACAGCACACTTGCCCCCAAGTGGCGGGGTTTGGTATTACAGACGAGAAACTCAGCAGGAATAGGCTGCAGTTTTACACGAGGTGCAGTTGCAacagtagtagtattaataatgataatagcaatattaataatgacttttatataataataacaataataacaacagatAATAGTAGTGATATTAACAACCGAGGTTTAAAATCATGAGTGGGATCAACATTCTTTAATAAATGGTCGTTTTCATGGGCTTGGTGGGATTCTTTTTTGAAGACGCATTAAAATGTAGTCAAATATACTACTATTGGAtgaagaaatggagaaaaatatgaTCAGTACTCTGAAGACACGCTCACTTTTACCGGGAGGAGTTTCCTCCAACTGAATTCACTGTATTGCATTAAAACTAGATTCAATTTCCCTATAGTTTCCTCACCAGTCCACTGAAATTTACACAGACTCAATTACCTAGATGCTGTAATGTAACTGACCATCAAAGCAAAACTGGGTTAAAACAAAGCACACTAGAAAGAGTAAAAATGTGAGAGAAAGAAAACGTTGCTCTTATATCAAGCAACTGGAATAAAAAGAAACAGCACAAACTTGAAAGATTGCAATCCAATAATGCAACACAATCTCTGGAAGCAGTTTAGCACACAGTCCCAAACCGTATGTGTAGGCGAAGACTAACTGAATCATTATACAGCTGTTTTTGACAGTAATCTGAAGGCCTACAACTAGATCATCCTTTGATCATCCAGTGTTTTTATCCATTAGGATGGAGAACATCAGGCTGGCGGTCCAGCGAATGACCTCCTAAGTATTCATAAGTTTCAGTGACATTGTCCAATCGCTGAAATCCAGAAAGGCTGTCGTTTTGTGGGCTGGACAGGGTTTGGTAGAGAGTCTGCATCATTTTCCTTCACATCAAACATCACAGCAATGataagaggagaaaaaaaataaatcaactttCGGTTTTCTGCGTCTTCATGTTGCCCCATACATGCGTCTCCAAAGGAAATGCAGAGATGAATGACATTAGAGTGGACATGGTTCAATACTCCACACACCTCAGAGGAAGGGGCTTCATTGTATGACGTCAAATGAAAACGTAAAACTCACGCTAATATCACACCAAGGCAAGCTTTCGCACAATCGTATGAGGCTGAAAAAATCTTTATCCTACAAAAATACTGATTTCATGCCACAGTGGGTACACTTGTTACCAATACATCATGCATTTAACTGCAAAACTATATCTGAAATCATGTCTGCTAGGTTGCCATTGAGTCTGCCTCTGTGTCTACTTGTGGGACAGGAGTTTGTTATCGCCTGCTGACTGCAAGTATAGAACTACAATTATAGAAGTATGCAGTAAAAATTTCACATTCCTCCAAGGAAGATAATTTACTTGTGATTTACACATAAAGGAAACAAATTATCTCAAATCACCATGAGTGGGGGGATAACTGCTGATTTGGTCCACATTAAGAATACCTCAGTAATATCATTCAGAGTTGAAGCACATTCACAACCGATATACCTGAAAGCAACTTCTTCTGagaacacacacacgtgcacacacactctctcactcacacacacacatctaaaaaTACAGCATCAACCTCAAGAAGCATCACTGACACTAAACCCAACTTCAGCTGTCAAGACAGAGGTGCATCCCTGTAAAATATTTAGAGTTAGGATTGAGGAAAACTAAAAGGTCAAACCACAGCATCACACCTCAATTTCAATCTTCACAAcaaacacttgttttttttttacctggtctAAGAACAGAACAAGATAAAGTAGTTAAAGGAACTTGATGAACTAAAGAAATAAGCCACACAATAAGAATGCATACTCAAAAATCTCCTAACAGGAGTGAAGGAGAGAAAGagataaaagattaaaaataaaaccaccatAAATATTCTTTTTAACTTTTCTTGAActaagtcaaaaaaaaaagaaaggataaAGCATTCAACAGTCAAATATAGAAAAACGAAATGCAAaggaaaaaaatctttctgtcaGAAACGCGTGTAGATGAAAGGAAAAAGACCAGCATGAACTCCCACCTCTGACTTATGGGCTTCTTTCTGTTTTGTCCTCTCTGAACATTAATTTAAACCaacaatacttacattttctttaaatattcaACTTTAAATTGACTCAAAAttgcaacagcaaaaaaaaaatgcaattaaacctatagtttaaaaaaaaatggactgCGGTCCTTCACAAAGAAAATGAGAGGCTGGAATTTAAGACAAGAAAAGGAAATTGTGAGAGCAGGGGGAAGACAAAAAGCACTCTTGGTCATTACAGCATGGATACGCCATCAAACCCACAGATAAAATGATTTCTAAGGGGAAAAGTTAAAAAGAAACTAGTCAAATTGAAGGGTATGAGCTGATCATTCGGGGTGGCTTTTGGTCTCGATCAGAAACGCCATACTGTGGGCTCAGAGCTCAACGTCTGGGCAAACGTTGTCATCAATCTAGGAGGTGAGATTGATCAAGATCCACCGGTAAAATGGCGCAGTTTTTAAAAAAGAGTGGAAGAAAAAGAAagggcaaaacaacaacaacaaaaaaatgtatcaatGGAAAGTTTTCTTTGCCTTTTCGAACTATCAGTTTCTTTTGAGTGTTGACAAACTTCCAACTCCTGCTTGGCTCACTTTGGAGATCCGTGGCGTTTTTTGGATGGCTATTTCTTCTTGCCGAAGAAACTGAAGCGCTTCTCGCGGTCTCTCTCTTTGCCGTCTTTGTTGCGCATGGTTACTCCTCCGGCCTCGCCTGAGCTGGG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00062049 True 2931 lncRNA 0.38 2 37708702 37711850

Neighbor

gene id symbol gene type direction distance location
XLOC_031250 NA coding downstream 104967 37592276 ~ 37603735 (-)
XLOC_031249 NA coding downstream 225682 37480447 ~ 37483020 (-)
XLOC_031248 wdr44 coding downstream 367658 37316683 ~ 37341044 (-)
XLOC_031247 NA coding downstream 436391 37266944 ~ 37272311 (-)
XLOC_031246 lrch2 coding downstream 444207 37132016 ~ 37264495 (-)
XLOC_031252 AL935065.1 coding upstream 106020 37817870 ~ 37820878 (-)
XLOC_031253 arhgap35b coding upstream 152855 37864705 ~ 37881345 (-)
XLOC_031254 si:ch211-139a5.9 coding upstream 172172 37884022 ~ 37886077 (-)
XLOC_031255 tmprss13b coding upstream 176245 37888095 ~ 37900395 (-)
XLOC_031256 scn4bb coding upstream 206960 37918810 ~ 37935621 (-)
XLOC_031242 BX927323.1 non-coding downstream 764727 36934568 ~ 36943975 (-)
XLOC_031240 NA non-coding downstream 801323 36903146 ~ 36907379 (-)
XLOC_031259 BX640520.1 non-coding upstream 323487 38035337 ~ 38038217 (-)
XLOC_031269 NA non-coding upstream 538194 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 903018 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 909107 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 985646 38697496 ~ 38705831 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2173761 LOC106563448 misc NC_048593.1 CM023247.2 30336852 ~ 30355090 (+)
eurasian perch (Perca fluviatilis) G167818 NA non-coding NC_053127.1 CM020924.1 22816749 ~ 22819328 (+)