XLOC_031254 (si:ch211-139a5.9)


Basic Information

Item Value
gene id XLOC_031254
gene name si:ch211-139a5.9
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37884022 ~ 37886077 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060688
AAACACTCAGAATCCTCTGTCACTTACAGTCTCACACAGATACAGGGGTGGAATTATCAGCTCTGACATATTTGAGATCCTGCAGCACATCAAAAAGATGGGAGTGGAAAGTCCTGAGCATTCAGATGCTGATTTCACCTATGATTATGAGTTAATCAGAAGAGGAGGACTGATCTTCGCagctgttttgttctgtttgggCATGGTTATCATATTCAGCAAAAAACTCAGATGTGGAAAGTCCTCTGCTACGCATGAAGATAATGGTGATCTTTGACCTCTTCTTCGTTAACCTTCACTGTATTGGGACACTTCAATATTTTCACCAAGGATGACAATATCTTTTTCACTTTTGGGTTTCAACTTACATCCATATATAGTCTGCTGAATACTGTAATTTTTTTAGTTCACAAGATCTGACACAATGTATGCAATCAcaataaaatgttcaaaatga
>TCONS_00060689
CTCTGTCACTTACAGTCTCACACAGATACAGGGGTGGAATTATCAGCTCTGACATATTTGAGATCCTGCAGCACATCAAAAAGATGGGAGTGGAAAGTCCTGAGCATTCAGATGCTGATTTCACCTATGATTATGAGTTAATCAGAAGAGGAGGACTGATCTTCGCagctgttttgttctgtttgggCATGGTTATCATATTCAGCAAAAAACTCAGATGTGGAAAGTCCTCTGCTACGTGAGGCACATATATAAGACTTTTACAATAAAAGATACAGTAAAAGATAaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094561

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060688 False 457 mRNA 0.38 6 37884022 37886077
TCONS_00060689 True 289 mRNA 0.39 4 37884556 37886063

Neighbor

gene id symbol gene type direction distance location
XLOC_031253 arhgap35b coding downstream 2677 37864705 ~ 37881345 (-)
XLOC_031252 AL935065.1 coding downstream 63144 37817870 ~ 37820878 (-)
XLOC_031251 NA coding downstream 172172 37708702 ~ 37711850 (-)
XLOC_031250 NA coding downstream 280287 37592276 ~ 37603735 (-)
XLOC_031249 NA coding downstream 401002 37480447 ~ 37483020 (-)
XLOC_031255 tmprss13b coding upstream 2018 37888095 ~ 37900395 (-)
XLOC_031256 scn4bb coding upstream 32733 37918810 ~ 37935621 (-)
XLOC_031257 mpzl2b coding upstream 62206 37948283 ~ 37963763 (-)
XLOC_031258 si:ch211-139a5.1 coding upstream 95723 37981800 ~ 37997809 (-)
XLOC_031259 BX640520.1 coding upstream 149260 38035337 ~ 38038217 (-)
XLOC_031247 NA non-coding downstream 611711 37266944 ~ 37272311 (-)
XLOC_031242 BX927323.1 non-coding downstream 940047 36934568 ~ 36943975 (-)
XLOC_031269 NA non-coding upstream 363967 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 728791 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 734880 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 811419 38697496 ~ 38705831 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G183250 NA non-coding CI01000039 null 8002478 ~ 8004484 (-)