XLOC_031255 (tmprss13b)


Basic Information

Item Value
gene id XLOC_031255
gene name tmprss13b
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37888095 ~ 37900395 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060690
GCTCTGATCATGTAAGAGTTGTGCCACTAGCAGGTGCATGACAGAGAACAAATCTATAGCTGAAGAAGAGTACAGGTAGAGGCTACCTGACCGCTTTAAACGGATACTCACATATGGAGCACAAACAGACTGAGGCTCCTCCCTCATATGACTCTGTGGTGACTCAGAACATCACACCTCCACCTTCATATCCCAGTCTACAAATATTGTCGACCACTCAAGTCCAACCGTACTACATACCTCAGCCATTACCTCAAATTCCTGCTCCCCATGTAGTAGAGACAACAGTCCCACAACAGAGAACTCAAGCTGTCTCATACAGGAGCAAAAGGTGTTGCTATGGAGGATCCACTGGCATTGCTGCTGTAGTTGTCCTGGTTGTAATTGCTGTGTATCTGGGAGTGCGTTATGGACCGTCGCTGTGGGCTTTTTCTGAGAGAGACGCAGAGACAGACACATGTCCCGGTTCAGCAGTCAACTGTGATGGGAGGAAAGACTGTTCTCTAGGCAGTGATGAATCTCAGTGTGTGCGGATTGGTACAGGAAATGAATTGCAGGTATTGACCTCTAGGTCTGGGAGTTTTCTTCCAGTCTGCGCACAGGGCTGGAATAAAAACATAGCTGACCAAACCTGCCAACAGCTTGGCTTCAGACAGAGTTATTCGTATGGTGTCGTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAAGAAACATCTGGCTCTCAGTTGCCTAGTAACTGGAAAGTGTACATAGGTTTCGTGTCCCAGCTCAAGCTGCCCAGTCCGTATTATGTAAAGGAAATCATTTTACATGAAAAGTACAacccaacaacaaaaaactatgaCATCGCCTTGCTGAAACTCAATAAACCTGCCAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAGGGTGACAGTGGTGGTCCATTGGCATGTAAATCAAATGATGGTCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGAAGGCTGTGGACAGGTGAACCGTCCGGGGGTCTACAGTGATGTAGCCAAATATTTAATGTGGATATATAGCAAGATGCAGCAAGCACGACCATGACCTTCGACAATCATGAAGAACACACTCATTGCAGATTTGATAGCAGTTTTGCACAGAATGgaacatttttttctcatttttaaaaaaagtgaaacagTAAAGCAACATACATTtagagtaaatacattttttagtaagactttaaattcataatttaaatcatgaaaattcacttattttttactgtgtaattcaatgtatttattttctagaCATACTGTATGTACTGGAATAAAAACCTGGACTACA
>TCONS_00060691
GAGTGGGAGAGGAAGACATGAGTTACTGCAGGCTGAGCCCGTCCCGCTCTGATCATGTAAGAGTTGTGCCACTAGCAGGTGCATGACAGAGAACAAATCTATAGCTGAAGAAGAGTACAGGTAGAGGCTACCTGACCGCTTTAAACGGATACTCACATATGGAGCACAAACAGACTGAGGCTCCTCCCTCATATGACTCTGTGGTGACTCAGAACATCACACCTCCACCTTCATATCCCAGTCTACAAATATTGTCGACCACTCAAGTCCAACCGTACTACATACCTCAGCCATTACCTCAAATTCCTGCTCCCCATGTAGTAGAGACAATCCCACAACAGAGAACTCAAGCTGTCTCATACAGGAGCAAAAGGTGTTGCTATGGAGGATCCACTGGCATTGCTGCTGTAGTTGTCCTGGTTGTAATTGCTGTGTATCTGGGAGTGCGTTATGGACCGTCGCTGTGGGCTTTTTCTGAGAGAGACGCAGAGACAGACACATGTCCCGGTTCAGCAGTCAACTGTGATGGGAGGAAAGACTGTTCTCTAGGCAGTGATGAATCTCAGTGTGTGCGGATTGGTACAGGAAATGAATTGCAGGTATTGACCTCTAGGTCTGGGAGTTTTCTTCCAGTCTGCGCACAGGGCTGGAATAAAAACATAGCTGACCAAACCTGCCAACAGCTTGGCTTCAGACAGAGTTATTCGTATGGTGTCGTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAAGAAACATCTGGCTCTCAGTTGCCTAGTAACTGGAAAGTGTACATAGGTTTCGTGTCCCAGCTCAAGCTGCCCAGTCCGTATTATGTAAAGGAAATCATTTTACATGAAAAGTACAacccaacaacaaaaaactatgaCATCGCCTTGCTGAAACTCAATAAACCTGCCAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAGGGTGACAGTGGTGGTCCATTGGCATGTAAATCAAATGATGGTCAATGGTTTCTCACAGGCGTAACAAGTTGGGGAGAAGGCTGTGGACAGGTGAACCGTCCGGGGGTCTACAGTGATGTAGCCAAATATTTAATGTGGATATATAGCAAGATGCAGCAAGCACGACCATGACCTTCGACAATCATGAAGAACACACTCATTGCAGATTTGATAGCAGTTTTGCACAGAATGgaacatttttttctcatttttaaaaaaagtgaaacagTAAAGCAACATACATTtagagtaaatacattttttagtaagactttaaattcataatttaaatcatgaaaattcacttattttttactgtgtaattcaatgtatttattttctagaCATACTGTATGTACTGG
>TCONS_00060692
GTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAGGGTGACAGTGGTGGTCCATTG
>TCONS_00061541
GTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAG
>TCONS_00060693
GAGTGGGAGAGGAAGACATGAGTTACTGCAGGCTGAGCCCGTCCCGCTCTGATCATGTAAGAGTTGTGCCACTAGCAGGTGCATGACAGAGAACAAATCTATAGCTGAAGAAGAGTACAGGTAGAGGCTACCTGACCGCTTTAAACGGATACTCACATATGGAGCACAAACAGACTGAGGCTCCTCCCTCATATGACTCTGTGGTGACTCAGAACATCACACCTCCACCTTCATATCCCAGTCTACAAATATTGTCGACCACTCAAGTCCAACCGTACTACATACCTCAGCCATTACCTCAAATTCCTGCTCCCCATGTAGTAGAGACAACAGTCCCACAACAGAGAACTCAAGCTGTCTCATACAGGAGCAAAAGGTGTTGCTATGGAGGATCCACTGGCATTGCTGCTGTAGTTGTCCTGGTTGTAATTGCTGTGTATCTGGGAGTGCGTTATGGACCGTCGCTGTGGGCTTTTTCTGAGAGAGACGCAGAGACAGACACATGTCCCGGTTCAGCAGTCAACTGTGATGGGAGGAAAGACTGTTCTCTAGGCAGTGATGAATCTCAGTGTGTGCGGATTGGTACAGGAAATGAATTGCAGGTATTGACCTCTAGGTCTGGGAGTTTTCTTCCAGTCTGCGCACAGGGCTGGAATAAAAACATAGCTGACCAAACCTGCCAACAGCTTGGCTTCAGACAGAGTTATTCGTATGGTGTCGTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAG

Function

symbol description
tmprss13b Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS13 (transmembrane serine protease 13).

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090309-2 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS13 (transmembrane serine protease 13).

Ensembl:

ensembl_id ENSDARG00000077573

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060690 False 1790 mRNA 0.45 13 37888095 37900350
TCONS_00060691 False 1813 mRNA 0.45 13 37888114 37900395
TCONS_00060692 False 547 nonsense_mediated_decay 0.50 6 37890607 37894891
TCONS_00061541 False 526 lncRNA 0.49 5 37890777 37894891
TCONS_00060693 True 1004 mRNA 0.49 8 37893471 37900395

Neighbor

gene id symbol gene type direction distance location
XLOC_031254 si:ch211-139a5.9 coding downstream 2018 37884022 ~ 37886077 (-)
XLOC_031253 arhgap35b coding downstream 6750 37864705 ~ 37881345 (-)
XLOC_031252 AL935065.1 coding downstream 67217 37817870 ~ 37820878 (-)
XLOC_031251 NA coding downstream 176245 37708702 ~ 37711850 (-)
XLOC_031250 NA coding downstream 284360 37592276 ~ 37603735 (-)
XLOC_031256 scn4bb coding upstream 18415 37918810 ~ 37935621 (-)
XLOC_031257 mpzl2b coding upstream 47888 37948283 ~ 37963763 (-)
XLOC_031258 si:ch211-139a5.1 coding upstream 81405 37981800 ~ 37997809 (-)
XLOC_031259 BX640520.1 coding upstream 134942 38035337 ~ 38038217 (-)
XLOC_031260 si:dkey-111e8.5 coding upstream 160564 38060959 ~ 38064065 (-)
XLOC_031249 NA non-coding downstream 405075 37480447 ~ 37483020 (-)
XLOC_031247 NA non-coding downstream 615784 37266944 ~ 37272311 (-)
XLOC_031242 BX927323.1 non-coding downstream 944120 36934568 ~ 36943975 (-)
XLOC_031269 NA non-coding upstream 349649 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 714473 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 720562 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 797101 38697496 ~ 38705831 (-)

Expression


Co-expression Network