XLOC_031256 (scn4bb)


Basic Information

Item Value
gene id XLOC_031256
gene name scn4bb
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37918810 ~ 37935621 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060694
AGTGCTTCAATGCTCTTCAGTTGTGTTTTACCGGCGGCTGGACTGCGTGTGTGTCTCTCACAAGGTGCGTcggtgagagtgtgtgtgtgtctgtgtgcatggcagagggtgtttgtttgtgtgtctgagcAGGCTTGGGACCAAAGCACTGCGTATTTGTGTACGGCATATTCTGCGGACTGGTGCCCTCTGCTTCTCCGGACAGGACACACAGATTTACCTGCTCAACAGAGGTCAGAGGGCAAACGAATAACCCAAATAACTGAGTTATATGGAGTTCTGAAATTTTATCTTCACCGCTGAGCAGATTCTTGATCTTCCAGACCTCTGAGACCTGGACAGGCCTTTGACAGGAGGAGTCTTATGCttgatgtaaaaaaaactgtaagcacAGTTTGATCTAGTACGCTCTGCCAAGAAGAAGTCAGGAGTCTTTGCCACCCACGCAGCATCTTCGGGAACAAAGACTTCCGGGAAACTACCGAGAACTGCTGAGAAGGGCTGGTGGACACAGCAAAAGGAAAggggaagaaagtgaagagcaggatGGTGTCACGGAGCGGAGGGCGTCTAAGAGGAGGAGGAAGTAGAGGAGCTCCGTCAGAAGGAAGTGTGTCCTGTCTTCTGCTGGCACTCATTATTGGTGTGTGTTGTGTTCATGCTTTGGAAATGAACACGGGCAAGGTGCCTTTCTTGGAAGCGGTAAATGGCAGCACAGTCCTTCTGCCCTGCACCTATGCCAGCTGTATTGGGATCACCAACCTATACTTCAAATGGGAGTTCAATGACAATGGCACCATGCAGAAGGTGGCAGATTCTGTGATTCCAACTGATCATATGGAGCCAAACAAGGTGCAAATTTACCGTGAGCGGGTGGAGTATGTTGGCTCCAGTAAAGAAAATAACATCTCTATCCTGCTTTGGAATGTCACATTCGAGGACGCAGGCGTCTACACCTGCTTCGGCAAAAACCCCAAAGAGAAGGGCAGGAATCACAGCGCCTTTTTCACTCTCTATGTAGTAGAGGAACTAAAGGTGGTCGATAACACGCTCACCATCATCATCGCCTCCTGTGTTGGCGGATTCATCGCTTTTCTAATGACCTTCATGCTGCTAAAGAACTTAACCCTGTTCATTCTCGCAAAGATGGAGGAAAAAAAtaaggAGTGCCTTGTCACCTCCTCAGGGATTGATAACACAGAGAACGGTCTGTCGGGCTCCAAATCTACACCAAAGAAAGCATGACAACGTGCAACCAAACACAATCACACATGCACGTGAATACATGGATCAGCCATCATGCTGTGCTCTTGCTGTTCATTCACATCCGTGTTTAGAAACACTATATGCTTCAGTTTTCATGAGCAATTATAGTATGAAGCTAACTTTAAAGAATGTCCATTCGAACATTTCAATACTGTTCACACAGCTCTTTTTAAACATATGCAAACACGGATATGAATGAAAAAAGGGCATTATGTATTTCTGCATATATTgaatttatatatgcatttaaatatgcACCACATGCAGCCTCATGCACTTTAGTTTCTCAGCCCACACTAAATCTGTGGGCTGAATTTATTCTTATgatagaaaaagaaaatattttcttcaaATAATGCTTGAGACAGGGATAAATGTAGCTATGCTGTTCATTTAGTTCATTGAACTGGACTGTAAAACTGTGAGAGGCCTGTGGCCTCATGTAGGTGCCTGAATTCAGGAGTTCAGCACTGGCAGATTAATGTTTTGGGATGACGTTTTGTTTTGAGCAAAGGTAATGTTTGTTAAAATGCAATCGGTTTTTAAAAAGTATCTGTAGTAGTACGAAGATCTGGAGGGATGTGATGGTCGGGGAAAAATGgatcaaagg
>TCONS_00060695
atGGTGTCACGGAGCGGAGGGCGTCTAAGAGGAGGAGGAAGTAGAGGAGCTCCGTCAGAAGGAAGTGTGTCCTGTCTTCTGCTGGCACTCATTATTGGTGTGTGTTGTGTTCATGCTTTGGAAATGAACACGGGCAAGGTGCCTTTCTTGGAAGCGGTAAATGGCAGCACAGTCCTTCTGCCCTGCACCTATGCCAGCTGTATTGGGATCACCAACCTATACTTCAAATGGGAGTTCAATGACAATGGCACCATGCAGAAGGTGGCAGATTCTGTGATTCCAACTGATCATATGGAGCCAAACAAGGTGCAAATTTACCGTGAGCGGGTGGAGTATGTTGGCTCCAGTAAAGAAAATAACATCTCTATCCTGCTTTGGAATGTCACATTCGAGGACGCAGGCGTCTACACCTGCTTCGGCAAAAACCCCAAAGAGAAGGGCAGGAATCACAGCGCCTTTTTCACTCTCTATGTAGTAGAGGAACTAAAGGTGGTCGATAACACGCTCACCATCATCATCGCCTCCTGTGTTGGCGGATTCATCGCTTTTCTAATGACCTTCATGCTGCTAAAGAACTTAACCCTGTTCATTCTCGCAAAGATGGAGGAAAAAAAtaaggAGTGCCTTGTCACCTCCTCAGGGATTGATAACACAGAGAACGGTCTGTCGGGCTCCAAATCTACACCAAAGAAAGCATGACAACGTGCAACCAAACACAATCACACATGCACGTGAATACATGGATCAGCCATCATGCTGTGCTCTTGCTGTTCATTCACATCCGTGTTTAGAAACACTATATGCTTCAGTTTTCATGAGCAATTATAGTATGAAGCTAACTTTAAAGAATGTCCATTCGAACATTTCAATACTGTTCACACAGCTCTTTTTAAACATATGCAAACACGGATATGAATGAAAAAAGGGCATTATGTATTTCTGCATATATTgaatttatatatgcatttaaatatgcACCACATGCAGCCTCATGCACTTTAGTTTCTCAGCCCACACTAAATCTGTGGGCTGAATTTATTCTTATgatagaaaaagaaaatattttcttcaaATAATGCTTGAGACAGGGATAAATGTAGCTATGCTGTTCATTTAGTTCATTGAACTGGACTGTAAAACTGTGAGAGGCCTG
>TCONS_00060696
AGTGCTTCAATGCTCTTCAGTTGTGTTTTACCGGCGGCTGGACTGCGTGTGTGTCTCTCACAAGGTGCGTcggtgagagtgtgtgtgtgtctgtgtgcatggcagagggtgtttgtttgtgtgtctgagcAGGCTTGGGACCAAAGCACTGCGTATTTGTGTACGGCATATTCTGCGGACTGGTGCCCTCTGCTTCTCCGGACAGGACACACAGATTTACCTGCTCAACAGAGGTCAGAGGGCAAACGAATAACCCAAATAACTGAGTTATATGGAGTTCTGAAATTTTATCTTCACCGCTGAGCAGATTCTTGATCTTCCAGACCTCTGAGACCTGGACAGGCCTTTGACAGGAGGAGTCTTATGCttgatgtaaaaaaaactgtaagcacAGTTTGATCTAGTACGCTCTGCCAAGAAGAAGTCAGGAGTCTTTGCCACCCACGCAGCATCTTCGGGAACAAAGACTTCCGGGAAACTACCGAGAACTGCTGAGAAGGGCTGGTGGACACAGCAAAAGGAAAggggaagaaagtgaagagcaggatGGTGTCACGGAGCGGAGGGCGTCTAAGAGGAGGAGGAAGTAGAGGAGCTCCGTCAGAAGGAAGTGTGTCCTGTCTTCTGCTGGCACTCATTATTGGT
>TCONS_00060697
CTTCAGTTGTGTTTTACCGGCGGCTGGACTGCGTGTGTGTCTCTCACAAGGTGCGTcggtgagagtgtgtgtgtgtctgtgtgcatggcagagggtgtttgtttgtgtgtctgagcAGGCTTGGGACCAAAGCACTGCGTATTTGTGTACGGCATATTCTGCGGACTGGTGCCCTCTGCTTCTCCGGACAGGACACACAGATTTACCTGCTCAACAGAGACCTCTGAGACCTGGACAGGCCTTTGACAGGAGGAGTCTTATGCttgatgtaaaaaaaactgtaagcacAGTTTGATCTAGTACGCTCTGCCAAGAAGAAGTCAGGAGTCTTTGCCACCCACGCAGCATCTTCGGGAACAAAGACTTCCGGGAAACTACCGAGAACTGCTGAGAAGGGCTGGTGGACACAGCAAAAGGAAAggggaagaaagtgaagagcaggatGGTGTCACGGAGCGGAGGGCGTCTAAGAGGAGGAGGAAGTAGAGGAGCTCCGTCAGAA

Function

symbol description
scn4bb Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in cardiac ventricle; liver; nervous system; and solid lens vesicle. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).

GO:

id name namespace
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-031116-71 Predicted to enable sodium channel regulator activity and transmembrane transporter binding activity. Predicted to be involved in cardiac muscle cell action potential involved in contraction; regulation of sodium ion transmembrane transporter activity; and regulation of ventricular cardiac muscle cell membrane repolarization. Predicted to act upstream of or within ion transport. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in plasma membrane. Is expressed in cardiac ventricle; liver; nervous system; and solid lens vesicle. Human ortholog(s) of this gene implicated in long QT syndrome 10. Orthologous to human SCN4B (sodium voltage-gated channel beta subunit 4).

Ensembl:

ensembl_id ENSDARG00000060319

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060694 False 1876 mRNA 0.45 6 37918810 37935621
TCONS_00060695 False 1153 mRNA 0.43 5 37918987 37933983
TCONS_00060696 False 645 mRNA 0.50 2 37933885 37935621
TCONS_00060697 True 502 mRNA 0.52 2 37933924 37935607

Neighbor

gene id symbol gene type direction distance location
XLOC_031255 tmprss13b coding downstream 18415 37888095 ~ 37900395 (-)
XLOC_031254 si:ch211-139a5.9 coding downstream 32733 37884022 ~ 37886077 (-)
XLOC_031253 arhgap35b coding downstream 37465 37864705 ~ 37881345 (-)
XLOC_031252 AL935065.1 coding downstream 97932 37817870 ~ 37820878 (-)
XLOC_031251 NA coding downstream 206960 37708702 ~ 37711850 (-)
XLOC_031257 mpzl2b coding upstream 12662 37948283 ~ 37963763 (-)
XLOC_031258 si:ch211-139a5.1 coding upstream 46179 37981800 ~ 37997809 (-)
XLOC_031259 BX640520.1 coding upstream 99716 38035337 ~ 38038217 (-)
XLOC_031260 si:dkey-111e8.5 coding upstream 125338 38060959 ~ 38064065 (-)
XLOC_031261 si:ch211-284e13.4 coding upstream 152973 38088594 ~ 38094130 (-)
XLOC_031250 NA non-coding downstream 315075 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 435790 37480447 ~ 37483020 (-)
XLOC_031247 NA non-coding downstream 646499 37266944 ~ 37272311 (-)
XLOC_031242 BX927323.1 non-coding downstream 974835 36934568 ~ 36943975 (-)
XLOC_031269 NA non-coding upstream 314423 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 679247 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 685336 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 761875 38697496 ~ 38705831 (-)

Expression


Co-expression Network