XLOC_031258 (si:ch211-139a5.1)


Basic Information

Item Value
gene id XLOC_031258
gene name si:ch211-139a5.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37981800 ~ 37997809 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060701
CACGCTCCTGTCACAGCAGCACCACATGTCTTACATCAAACACATGGAGGCCCCTCCTATGCGCCCTCAGTTACACCAGCAAGCAACTTCGCTGGATTAAAAAATAGTCATGGTGCCAATTTTCAACCCCAAGCTGCAGTGCGTCTTCCCCAAACCTTCATGCAAACCACATCTATACGAAACCCCTCCCCTCAGCCCCTACCTTCCAATCCGGCACCGGCAGGCAAACTGGACAAGCTGCTGGAGAGACTGGGCTCACATTTCCCACAGTGCACAAGGGATCAGTTAACTCGTGTACTACAGCAAATCAAAAGTGAGCGTGGTACTATGGCTGGCATGTCGATGGATGATGTCACTCAGCAAGTAGCACAGAGACTCGTACAGAACCAAAGACCGCCACCAGGCCCTATAGCACCTCCACCTGGAGCCAGAGCTTTTCCTGGTTCTGTTGGTCCTATCCAGCGTCCTGTAGTGCATCCACCACATCCCATGCGGCCTCATTTCCCACCCCAAGTTGCTCAGGTGTTCCACACAAGACCCCCGCAGTCCGCTCCTCGTAAATTTTGTTTAATGTGTCAAAATCCTGTGGACACTGCAACCCAGTACAACACAAACTGCTCCCATATAATGCACAAAGATTGTGTTAGTGTTTGGCTGAAGACCAGTAAAAATAATTCCTGTCCTTTTTGCCCATCCAAATGAGGACCGACTTaaggagaaagaaaagaaagtcaCACTCAGTTAAGCCAATACCTACAAAAAAGGGAAGTGTAATGATTATATTAATAGTTATCAAGGCATTAAGTTTTGGTCATGATAACAATGtagttaattatttttataaaggaCAGCATGTCGATATACTAATTGATGTTATTTAGCAGATCAGGCGAGATCCTCACAATATGAATTATACTTATTTCAGTATTCAGTGTTATCCAAAGATTTTCAAACATACCCTGAAGTATAATCCTCATTATGTAAGCTTTTCATAAAGGTGTGTAACTTAAACCTCTGAA
>TCONS_00060702
AAAATGCGTGCGACGTCACGTGAAGTCCCGGAAGTAAAACAGGTTTTGATGATGTCACGAAAGTTGCGCCAGTTGTCTGTGcctttttaaactaaaataacaatTTTACTAATCGACTTACATGACCTACTTTATCCTCCGAGCATACTGTTAGCTATTTGTCCATCAAGACCAGCTTTTCGAATGTTTAGAATCCAGAGTCTTTGGTCGCTGAGTTTGCCTGTCAATGGAAAGTGAAATACACACCGAGTGGAGCTGGGCTTTAGAGGAAGATTTACTTCAGAATCCCGTTTCAGCAGTGACTCGGCTGGACTCATCCCCATGGAGTTCATCCGCCGGGCCCTGGTCCACAGAGAGCGGCTTCCCGACAGTGCCGACACCGTATGAAGAATCCAACACGTTTACAGTCAGCAAAGAAACACAGAGCCAAACTGTACAGACAGAGGATTGGACGGGGGAAAGAGCTACGAACACAAATGAGGACTGGGAGTCTGAGATACGTGCTTTAGTAGACTGCACTACTGAGTTGAGTGAGCAGTATGAGGCTTTAGTGAAGCAGCAAGCGGCAGAGCAAGAGGAGCACAACCTTCATGTCCACAATCTCCAAAAGACCAGAGATGACCGGAATCATCAGTACCAGGAGTTTATTGAAAAAATTGAGTCTTTACAAGTTAAATTGAAGCTAAATAGCAGCAAGACTACACGGAAAAACTTCATGGTAAAACGACAAGAGCTGACTGCAGAGAAAGAGCGAATGGAAGAGGAGAAAACTAGactGGCTCAAGAGCTGGAGGGCACAGAAAAGAAACTCAAGATGCTGATTGAAGAACAGAGTCAAGAGAAgcTGTCCTGGGAGCAGGAAATAGCAGACTTGAGGGTGGAGATGGAGACGCTGTGCAGACAGGCCGAACAGGCCAGTCAGACGGTTCTTCAGGATGAGATAGCTGCACTTGAGATGCAGGAAAAGCTTGCTCTTTCTCAAGTAGAGGACTGGATTATCGATGCTGAAAAATATCTGAATTTTCTCAGATTAAATCCTTCCCAGCAGCACTTGCTCCAGCGGCAGAAGTGGGAGCATAATGTGGCGATAGTACGCAATAGTGTGGTAGGGCTAAAGAATAAGTATAATGAAAATCATCAACTCTTGCAGAGGGGGGAACAATTGGATAGTTTACCTTTAGTCCAGCTGCCATCACTTCCACCAGTGCCTACGTTGGAGATGATAATGAATCCTCTTCAGAATACTTCGTCCCATCCTGTTTTTAACAATGGTCTACCAACTACAACAACTTCCCCTCCTATAATTCATCCCCAGCTTCACCATTCGGTTACACCACCCCAGAGAGCCACACCACCACTTTCTGCCCCATCTCCTCAAAACACACCATACCTACCCAACACTATAGGTCCACAATCTTCACATGTCCCAAAGATGTATGGCCCTATGACAGCTCATTTACCTTCCCCTCAAATACCCATGCAAACTATCGGCCCACCTCCACCCTCATCCCACGCTCCTGTCACAGCAGCACCACATGTCTTACATCAAACACATGGAGGCCCCTCCTATGCGCCCTCAGTTACACCAGCAAGCAACTTCGCTGGATTAAAAAATAGTCATGGTGCCAATTTTCAACCCCAAGCTGCAGTGCGTCTTCCCCAAACCTTCATGCAAACCACATCTATACGAAACCCCTCCCCTCAGCCCCTACCTTCCAATCCGGCACCGGCAGGCAAACTGGACAAGCTGCTGGAGAGACTGGGCTCACATTTCCCACAGTGCACAAGGGATCAGTTAACTCGTGTACTACAGCAAATCAAAAGTGAGCGTGGTACTATGGCTGGCATGTCGATGGATGATGTCACTCAGCAAGTAGCACAGAGACTCGTACAGAACCAAAGACCGCCACCAGGCCCTATAGCACCTCCACCTGGAGCCAGAGCTTTTCCTGGTTCTGTTGGTCCTATCCAGCGTCCTGTAGTGCATCCACCACATCCCATGCGGCCTCATTTCCCACCCCAAGTTGCTCAGGTGTTCCACACAAGACCCCCGCAGTCCGCTCCTCGTAAATTTTGTTTAATGTGTCAAAATCCTGTGGACACTGCAACCCAGTACAACACAAACTGCTCCCATATAATGCACAAAGATTGTGTTAGTGTTTGGCTGAAGACCAGTAAAAATAATTCCTGTCCTTTTTGCCCATCCAAATGA
>TCONS_00060703
AAAACAGGTTTTGATGATGTCACGAAAGTTGCGCCAGTTGTCTGTGcctttttaaactaaaataacaatTTTACTAATCGACTTACATGACCTACTTTATCCTCCGAGCATACTGTTAGCTATTTGTCCATCAAGACCAGCTTTTCGAATGTTTAGAATCCAGAGTCTTTGGTCGCTGAGTTTGCCTGTCAATGGAAAGTGAAATACACACCGAGTGGAGCTGGGCTTTAGAGGAAGATTTACTTCAGAATCCCGTTTCAGCAGTGACTCGGCTGGACTCATCCCCATGGAGTTCATCCGCCGGGCCCTGGTCCACAGAGAGCGGCTTCCCGACAGTGCCGACACCGTATGAAGAATCCAACACGTTTACAGTCAGCAAAGAAACACAGAGCCAAACTGTACAGACAGAGGATTGGACGGGGGAAAGAGCTACGAACACAAATGAGGACTGGGAGTCTGAGATACGTGCTTTAGTAGACTGCACTACTGAGTTGAGTGAGCAGTATGAGGCTTTAGTGAAGCAGCAAGCGGCAGAGCAAGAGGAGCACAACCTTCATGTCCACAATCTCCAAAAGACCAGAGATGACCGGAATCATCAGTACCAGGAGTTTATTGAAAAAATTGAGTCTTTACAAGTTAAATTGAAGCTAAATAGCAGCAAGACTACACGGAAAAACTTCATGGTAAAACGACAAGAGCTGACTGCAGAGAAAGAGCGAATGGAAGAGGAGAAAACTAGactGGCTCAAGAGCTGGAGGGCACAGAAAAGAAACTCAAGATGCTGATTGAAGAACAGAGTCAAGAGAAgcTGTCCTGGGAGCAGGAAATAGCAGACTTGAGGGTGGAGATGGAGACGCTGTGCAGACAGGCCGAACAGGCCAGTCAGACGGTTCTTCAGGATGAGATAGCTGCACTTGAGATGCAGGAAAAGCTTGCTCTTTCTCAAGTAGAGGACTGGATTATCGATGCTGAAAAATATCTGAATTTTCTCAGATTAAATCCTTCCCAGCAGCACTTGCTCCAGCGGCAGAAGTGGGAGCATAATGTGGCGATAGTACGCAATAGTGTGGTAGGGCTAA

Function

symbol description
si:ch211-139a5.1 Predicted to enable ubiquitin-protein transferase activity.

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0004842 ubiquitin-protein transferase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2439 Predicted to enable ubiquitin-protein transferase activity. Orthologous to human RNF214 (ring finger protein 214).
ZDB-GENE-060526-39 Predicted to enable ubiquitin-protein transferase activity.

Ensembl:

ensembl_id ENSDARG00000092018 ENSDARG00000094018

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060701 False 1019 mRNA 0.44 5 37981800 37989179
TCONS_00060702 False 2212 mRNA 0.48 16 37982117 37997809
TCONS_00060703 True 1080 mRNA 0.46 10 37991513 37997774

Neighbor

gene id symbol gene type direction distance location
XLOC_031257 mpzl2b coding downstream 18037 37948283 ~ 37963763 (-)
XLOC_031256 scn4bb coding downstream 46179 37918810 ~ 37935621 (-)
XLOC_031255 tmprss13b coding downstream 81405 37888095 ~ 37900395 (-)
XLOC_031254 si:ch211-139a5.9 coding downstream 95723 37884022 ~ 37886077 (-)
XLOC_031253 arhgap35b coding downstream 100455 37864705 ~ 37881345 (-)
XLOC_031259 BX640520.1 coding upstream 37528 38035337 ~ 38038217 (-)
XLOC_031260 si:dkey-111e8.5 coding upstream 63150 38060959 ~ 38064065 (-)
XLOC_031261 si:ch211-284e13.4 coding upstream 90785 38088594 ~ 38094130 (-)
XLOC_031262 si:ch211-284e13.14 coding upstream 107092 38104901 ~ 38107741 (-)
XLOC_031263 si:ch211-284e13.6 coding upstream 112575 38110384 ~ 38122126 (-)
XLOC_031251 NA non-coding downstream 269950 37708702 ~ 37711850 (-)
XLOC_031250 NA non-coding downstream 378065 37592276 ~ 37603735 (-)
XLOC_031249 NA non-coding downstream 498780 37480447 ~ 37483020 (-)
XLOC_031247 NA non-coding downstream 709489 37266944 ~ 37272311 (-)
XLOC_031242 BX927323.1 non-coding downstream 1037825 36934568 ~ 36943975 (-)
XLOC_031269 NA non-coding upstream 252235 38250044 ~ 38255744 (-)
XLOC_031276 NA non-coding upstream 617059 38614868 ~ 38633719 (-)
XLOC_031277 NA non-coding upstream 623148 38620957 ~ 38622971 (-)
XLOC_031280 BX640512.1 non-coding upstream 699687 38697496 ~ 38705831 (-)

Expression


Co-expression Network