G1222069


Basic Information

Item Value
gene id G1222069
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 17558653 ~ 17586749 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1395039
cccactgtatatctatatttccatgtctaacaattgtatttatcgacatttataatgagtatttctgtaaaatgatgtggctctctgcaatttcaccggatctttttggaactagtgaacgtaacgtgccaatgtatactgagattttttaaatataaatatgaattttatcaaacaaaacatacatgtattgtgttacatgaagtcctatgagtgtcatctgatgaagatcatcaaaagttagTGAATAATTATATcactatttgtgctttttgtgactcctctctttggctggaaaaatggctgaatttttctgtgagttggtggtgacctaacataatcgtttgtggtgctgtaaagcctatttgataTCGGACACTGtgatgggattaacaacaagattacctttaaaacggtataaaatgGTATGTTTGAAAAACAGTATGtatgaggaattttaattatgagatttctgttgtttgaatttgccgccctgcactttcactggctgttgtcatatcgatccagttaacgggattgcagccttAAATTAAGCAATCCTTAGCCATGTATATAAATGGTGGGAAGGATATTATTTtgtctaccatggctatgcccgcATAGGATGACAATACCGCCCCTCcgcagggcacgagtggtcactgaatggtttgatgagcatgaaaacaatgtaaaccattAACCAtgaccgtctcagtcaccagatctcaaccaatttgaacacttatgggagattctggcaCGGTGCccgagacagcgttttccaccaccatcaacaaaacaccaaattatggaattgcctgtggaagaatggtgtcacatccctccagacacttgtagaatgcATGCCAAGGGGCATTGAAGCTGTATTTCCTTTATTTGTCAGTGACCTGTAAATACATGCATTATACAGTTTGTCATGACTTGCCCTTTTGGGAGCATGGAGCTGTAGCTACATGCAATTTAAATGGCTACCACCCTAAAGACTAGTTATGTGCAGCGCCAGCTGAATACGTTACAAATGGTTAAGAAATCTACAAAACTAAAGACTACACATTCAGTCTGCAGCTGTATATGTAAAATAGTCTAAGAAACTCAATCGAAGACGAGAGAAGGACATTGAACATTTCCCTATCAAATGACCATTGGTACGTCTGACGGAACACAACCAGAGACTTCTAATGAATTACTCTCCAAAGAAAATGGACCGTGCAATTTCAACAGAGAGAGACGACAAGACATACAAGTGTAAATATGTACATTGCAATTATTTTCGAATGAGCGGCCGTTCGTGTGCAAACTATTAGCATTTCCATGAGCGTAGTTATCAACTGTATGTAGTTGGTCCATTCTGTCTTTACGGCACTTTAtctgtccccacccctttccatTGTCTACCAAGCCATCATATCGGGTCAGTCCACTAAGGACTTTTCATTGTGTAGTTGTGTCATTGTGTAGTAATCAATGTGTAAGTTatcctgtttgtgtgtttatgtaattctgtgtgattataaataattaagccaatttgtatatcgctgattcatcatttatgctagggtttgtgcagatatccaagagttttgcgacattcagaatgagactgatagaaGGTAACAATTAATTTAATGACTGACTGATGACTGAAATGTAAGAGATCTTTATATCTTTAAGAGTTCATTCGGAAAACGGTAACTCGTTAAATACACTTCTTCCACGGTGCCCCAAGATTACTACTTAATTAATTGTTATATGATTAATTGAATTGCGTAATAATTAAATGTAGTTAATTGATTTCATCAAATAATtgtcatcacattaatgatagaAAAGACAACAATTTCTTATATTGAGCAATTCAATCATGTTGGCTTAACGTTCTCCATGCACCTATAAGAGAATACCTTTTAACCGCCCATAACTCATTCCAAAAAGGCTTCACAGCCATCGAGGTCCTCTTACTTTCAGCAGTTTCCCTGGTACATGTTTTCAGCATTGATATTCTACAGGGGCACCCATTTCCATACCAAATATTCCACGTAGCTCTTTCTTGGACCCGACGAGCATTCTCGCATTCCTAATTGTGAGGTAATTTGTTAAGTTGGGCAACCGTCTGAAGGGGGCAAGACGATAGGGGGATGTTTCTTCATCAACAATTCATCAAGGGCGGCTATGTCAAACGTGGATTTTCTTGAGGTTTTTAATTAGCATTTGTCATTGGCGGCAGATCCATGAGGCGCGACGTGTCCCGTTATGCCGTCTTTATCTTCAGGTCATTACGGATATGAGTCAGGGATGATCAACAGCTTTCTCTTCTCTGTTTCCTCACCACAACATGCCTAGCATAACAACGTCTAATTTTTTACTTTGCAGTCTAAGGGAATAAGGCCATTTTAGGAGCTATGGAGGTTCACTATTCTCTCCTTGTCTCGCCATTAATCTTCTACAGGCTGGCTGACCCTACAAGAGCTGACCCGTAAATAAACATTAAGTCGCATAACCTAAGAAATGAGTAATTCCCACAGTCCCTCTTTGTCAATGTCTAGCGGTGGTTTGGTCAAAGACACCATTTTAAGTCAGTTGGGAGAATTGTAAGGGGACATCCGAAATGGCTGTGGGTCTCAACACAAACCATGAAAGGTATTAGTCTTTATGCCATACGAGAGAGGAGAGTTTTGAGAGCATTGGCATGAAACCCAGCCACACAATGAAAACTGTTCGTTTTCATTTGGCTAGCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1395039 True 2763 lncRNA 0.39 2 17558653 17586749

Neighbor

gene id symbol gene type direction distance location
aga aga coding downstream 140004 17413147 ~ 17418649 (-)
asb5a LOC101464329 coding downstream 159373 17395671 ~ 17399280 (-)
spata4 spata4 coding downstream 163129 17390409 ~ 17395524 (-)
gpm6aa gpm6a coding downstream 203934 17337395 ~ 17354719 (-)
lrit3a LOC106604555 coding downstream 224480 17324942 ~ 17334173 (-)
ctso ctso coding upstream 39091 17625840 ~ 17634581 (-)
LOC110488931 pdgfc coding upstream 117323 17704072 ~ 17777597 (-)
LOC110489474 NA coding upstream 354178 17940927 ~ 17945892 (-)
gask1b fam198b coding upstream 417804 18004553 ~ 18013741 (-)
LOC110488938 LOC106604531 coding upstream 638519 18225268 ~ 18230133 (-)
G1221969 neil3 non-coding downstream 150685 17407074 ~ 17407968 (-)
G1221968 NA non-coding downstream 151759 17406546 ~ 17406894 (-)
G1221950 NA non-coding downstream 187778 17370566 ~ 17370875 (-)
G1221948 NA non-coding downstream 190943 17367443 ~ 17367710 (-)
G1221947 NA non-coding downstream 191224 17367180 ~ 17367429 (-)
G1222093 NA non-coding upstream 20446 17607195 ~ 17607559 (-)
G1222096 NA non-coding upstream 24753 17611502 ~ 17611709 (-)
G1222106 NA non-coding upstream 33317 17620066 ~ 17620402 (-)
G1222275 NA non-coding upstream 55277 17642026 ~ 17642244 (-)
G1222278 NA non-coding upstream 58243 17644992 ~ 17645211 (-)
G1219208 NA other downstream 2240493 15317793 ~ 15318160 (-)
G1218808 NA other downstream 2564274 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3001272 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 3843776 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 2249129 19835878 ~ 19836319 (-)
G1225499 NA other upstream 2546962 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2735029 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2878981 20465730 ~ 20470523 (-)
G1225875 NA other upstream 3136288 20723037 ~ 20723236 (-)

Expression


Co-expression Network