G1222957 (LOC106604530)


Basic Information

Item Value
gene id G1222957
gene name LOC106604530
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18177675 ~ 18179078 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1395974
ATAGTACAGTCTTAACTAATAATATGGTAGTATCTAAATTCTTCAAAAAGTCAGTGGAATAGATGAAGATGTGCAGTACCACTGCGTGTCTGGGGATGATAAAGGAAGATGTCATGCAATTTCATGTCTGAGGCAAACAAAACGTAATAACTTACAATTCCCCAAGTTTTTGCAGAAATGAAAAAGCCTGTTCATGTATGTGACTGATTCTGTTACTCTGTAGGACGAGCACAGTCATCATGTTGCATGACCAGAATGTTACGTTTCCAACACTTTCGATTTGATTCCCC
>TU1395976
gtgtaGATTTCATTTAAATGGCCTCTTGCATATTTACAAgaactatatattttttctacACCTGATATTACTACTAATGGATCCCCTCTCAAGTGTGACATTCATTCACAAAGTGAGCAGTGAAAAACATACAGGCTACTTACAATGATTTCAATTTATGCAAGTTATCAAAGTGGTCAATTTGCAGATCCGCGATAGGGTTATACGAGATGTTTAGCTGTAGTAAATCTCCCAGATGAACAAAGAGATTGGGAGGGATAGCCAGGAGTCTGTTGCTGGACAGATCTAATTCCCCAAGTTTTTGCAGAAATGAAAAAGCCTGTTCATGTATGTGACTGATTCTGTTACTCTGTAGGACGAGCACAGTCATCATGTTGCATGACCAGAATGTTACGTTTCCAACACTTTCGATTTGATTCCCC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1395974 False 290 lncRNA 0.38 2 18177675 18178239
TU1395976 True 422 lncRNA 0.39 4 18177675 18179078

Neighbor

gene id symbol gene type direction distance location
gask1b fam198b coding downstream 163934 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 231783 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 400078 17704072 ~ 17777597 (-)
ctso ctso coding downstream 543094 17625840 ~ 17634581 (-)
aga aga coding downstream 759026 17413147 ~ 17418649 (-)
LOC110488938 LOC106604531 coding upstream 46190 18225268 ~ 18230133 (-)
LOC110487745 NA coding upstream 61601 18240679 ~ 18242800 (-)
LOC110488940 LOC106604535 coding upstream 405302 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 965052 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 1011163 19190241 ~ 19195081 (-)
G1222656 NA non-coding downstream 126448 18050970 ~ 18051227 (-)
G1222653 NA non-coding downstream 129031 18048387 ~ 18048644 (-)
G1222629 NA non-coding downstream 143928 18033378 ~ 18033747 (-)
G1222602 NA non-coding downstream 173285 18004264 ~ 18004390 (-)
G1222513 NA non-coding downstream 229603 17947679 ~ 17948072 (-)
G1222974 NA non-coding upstream 17820 18196898 ~ 18197756 (-)
G1222979 NA non-coding upstream 18780 18197858 ~ 18199118 (-)
G1223101 NA non-coding upstream 204884 18383962 ~ 18384745 (-)
G1223107 NA non-coding upstream 218029 18397107 ~ 18400718 (-)
G1223164 NA non-coding upstream 268120 18447198 ~ 18447461 (-)
asb5a LOC101464329 other downstream 778440 17395671 ~ 17399280 (-)
G1219208 NA other downstream 2859515 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3183296 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3620294 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4462798 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1656800 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1954633 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2142700 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2286652 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2543959 20723037 ~ 20723236 (-)

Expression


Co-expression Network