G1222974


Basic Information

Item Value
gene id G1222974
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18196898 ~ 18197756 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1395993
ccacatatgctgagcacttgttggctgcttttcctttgctctgcggtccgactcatctcaAACGGTCTCCATTTGGTTGAGATCGggggttgtggaggccaggtcatctgatgccgcactccgtcactctccttcttggtcaaatagcccttatacagcctggaggtgttaggtcattgtcctgttgaaaaacaaatgatagtctcactaagcacaaaccagatgggatggcatgcGATGCTGTTTAAGtattccttgaattctaaataaatcactgacagtgtcaccagcaaagcacccccacaccatcacacctccttcatgcttcaaggtgggaactacacatgcagagattatccgttcacctatGCTGCGTCTCAAAAAGAcagcgtttggaaccaaaaatctcaaatttggactcatccgaccaaaggacagatttccaccagtctaatgtccattgctcatgtttcttggcccaagcaagtgtcttcttattggtgtcctttagtaggggtttcttcgcagcaatttgatcatgaaggcctgattcatgcagtatcctctgaatagttgatgttgagatgtctgttacttgaactacgTGAAGAATATATTTGGGAtgcagtttctgaggctggtaactctaaagaacttatcctctgcagcagtagtaactctgggtcttaatTTCCTGTGGaagtcctcatgagaaccagtttcgtCATAGCGCTTTATGGTTTTTGTGACAGCACTTGAACTTTCAaagttttccagattgactgaccttcatgtcttaaagtaatgatggactgtcatttctctttgcttatttgagctgttcttgccctaatatgga

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1395993 True 859 lncRNA 0.44 1 18196898 18197756

Neighbor

gene id symbol gene type direction distance location
gask1b fam198b coding downstream 183157 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 251006 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 419301 17704072 ~ 17777597 (-)
ctso ctso coding downstream 562317 17625840 ~ 17634581 (-)
aga aga coding downstream 778249 17413147 ~ 17418649 (-)
LOC110488938 LOC106604531 coding upstream 27512 18225268 ~ 18230133 (-)
LOC110487745 NA coding upstream 42923 18240679 ~ 18242800 (-)
LOC110488940 LOC106604535 coding upstream 386624 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 946374 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 992485 19190241 ~ 19195081 (-)
G1222957 LOC106604530 non-coding downstream 17820 18177675 ~ 18179078 (-)
G1222656 NA non-coding downstream 145671 18050970 ~ 18051227 (-)
G1222653 NA non-coding downstream 148254 18048387 ~ 18048644 (-)
G1222629 NA non-coding downstream 163151 18033378 ~ 18033747 (-)
G1222602 NA non-coding downstream 192508 18004264 ~ 18004390 (-)
G1222979 NA non-coding upstream 102 18197858 ~ 18199118 (-)
G1223101 NA non-coding upstream 186206 18383962 ~ 18384745 (-)
G1223107 NA non-coding upstream 199351 18397107 ~ 18400718 (-)
G1223164 NA non-coding upstream 249442 18447198 ~ 18447461 (-)
G1223165 NA non-coding upstream 250427 18448183 ~ 18448433 (-)
asb5a LOC101464329 other downstream 797663 17395671 ~ 17399280 (-)
G1219208 NA other downstream 2878738 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3202519 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3639517 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4482021 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1638122 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1935955 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2124022 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2267974 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2525281 20723037 ~ 20723236 (-)

Expression


Co-expression Network