G1222979


Basic Information

Item Value
gene id G1222979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18197858 ~ 18199118 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1395998
TGGCTCTTGATTTTATTAAATACGATTAcaacaaataaaataacaaatgatAACACACATATTGTAATGTGTGGGAGTGACTGAGTGCAAATAATGTTATGATTACTTCCTTCCAACGGAATGGCACATTACCACTGTTATCAGCAACTGTAAATTGAGACCTTTGAACAAACATTCTATCATGCCTTTAAGAAAATGCCTCCTgcgtcatcaaatcaaattttatttgtcatatacacatatttagcagatgccaTTGCATCTGTtgttcctaactccaacagtgcagtagtgtctaataattcacaacaatacacacaaatctaaaagtaaaagaatggattTAAGAAATACacaaatattaggacgagcaatgtcggagtagCATCGActagaatacaatagaatacattatatacatatgaaatgagtaaaacggtatgtaaacattattaaagtgactagtgttccattgttaaagtgaccagtgattccatgtctacgTACATagagcagcagcctctaaggtgcagagttgagtaactgggtggtagcaagCTAAtgatggctatttagcagtctgattgccttgagagagaagctgtttttcagtctctcggtcccagctttgatgcacctgtactgtcctcgccttctggatgatagctggcCATCAAAGATGGACGCAAACCCAAGATTGACTGCTCTTGGAACATGACATACTGTATCTTTGTGTTGCAATAGCAAATGCCATGAACAAGTCACCTCTGCTGTCTGCATAGCCTGCCTGTACATTAAATAAACAACATGAATCTGTCAGCAGTTCACTGCTCCTCTCAGAGATGATGTCATAATTATTTCAAAGACAAAATGAAAACAAttcaaacatacagtaccagtcaaaggtttggacacacctactcacttaaaatcagataccacctggtgCTTCTCCCCTGACAAATATATGTCTGACTCAGTAGCAtcagttgccctctttgtgaagaagcaaacacgagtcactgagccactttgtttcatcgaccattacagtagtgagttcttgtgcagcttgttgcttgatctttgcatgcacatacagtaccagtcaaaggtttggacacacctactcattcaagggtttttcgtttttttttttactttgtagaataatagtgaagatatcggaactatgaaataacacatattgaaccatgtagtaacgaaaaaagtgttaaacaaatcaaaatatattttatat

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1395998 True 1261 lncRNA 0.37 1 18197858 18199118

Neighbor

gene id symbol gene type direction distance location
gask1b fam198b coding downstream 184117 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 251966 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 420261 17704072 ~ 17777597 (-)
ctso ctso coding downstream 563277 17625840 ~ 17634581 (-)
aga aga coding downstream 779209 17413147 ~ 17418649 (-)
LOC110488938 LOC106604531 coding upstream 26150 18225268 ~ 18230133 (-)
LOC110487745 NA coding upstream 41561 18240679 ~ 18242800 (-)
LOC110488940 LOC106604535 coding upstream 385262 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 945012 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 991123 19190241 ~ 19195081 (-)
G1222974 NA non-coding downstream 102 18196898 ~ 18197756 (-)
G1222957 LOC106604530 non-coding downstream 18780 18177675 ~ 18179078 (-)
G1222656 NA non-coding downstream 146631 18050970 ~ 18051227 (-)
G1222653 NA non-coding downstream 149214 18048387 ~ 18048644 (-)
G1222629 NA non-coding downstream 164111 18033378 ~ 18033747 (-)
G1223101 NA non-coding upstream 184844 18383962 ~ 18384745 (-)
G1223107 NA non-coding upstream 197989 18397107 ~ 18400718 (-)
G1223164 NA non-coding upstream 248080 18447198 ~ 18447461 (-)
G1223165 NA non-coding upstream 249065 18448183 ~ 18448433 (-)
G1223189 NA non-coding upstream 259930 18459048 ~ 18459249 (-)
asb5a LOC101464329 other downstream 798623 17395671 ~ 17399280 (-)
G1219208 NA other downstream 2879698 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3203479 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3640477 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4482981 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1636760 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1934593 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 2122660 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2266612 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2523919 20723037 ~ 20723236 (-)

Expression


Co-expression Network