G1223101


Basic Information

Item Value
gene id G1223101
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18383962 ~ 18384745 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1396130
GTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTGAGTAAAACCAGCACTATTTAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTAAATAACAGGTAAGTAAAACCAGCACTATTTAACAGGTAGGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCATTAAATAACAGGTAAGTAAAACCAGCACTATTTAACAGGTTAGTAAAATAAGCACTAAACCAAACAAACGAGGCATCAGAAATGAGGGAAGGCGCATAAATTGGGCAGAATAAAATAGCATGGAAAGATCGGTCACCAAAACTTACCCTAAACTCCTCCATTTCTTCTTCCTAGAAGGGATAGCCATGAACAGTGAAGCGT
>TU1396129
GTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTAAATAACAGGTGAGTAAAACCAGCACTATTTAACAGGTGAGTAAAACCAGCACTATTTAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTATTTAACAGGTGAGTAAAACCAGCACTATTTAACAGGTAAGTAAAACCAGCACTATTTAACAGGTAAG

Function

NR:

description
PREDICTED: dentin sialophosphoprotein-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1396130 False 514 lncRNA 0.37 3 18383962 18384745
TU1396129 True 356 lncRNA 0.35 2 18384336 18384745

Neighbor

gene id symbol gene type direction distance location
LOC110487745 NA coding downstream 141162 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 153829 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 370221 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 438070 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 606365 17704072 ~ 17777597 (-)
LOC110488940 LOC106604535 coding upstream 199635 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 759385 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 805496 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 812779 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 819033 19203778 ~ 19211568 (-)
G1222979 NA non-coding downstream 184844 18197858 ~ 18199118 (-)
G1222974 NA non-coding downstream 186206 18196898 ~ 18197756 (-)
G1222957 LOC106604530 non-coding downstream 204884 18177675 ~ 18179078 (-)
G1222656 NA non-coding downstream 332735 18050970 ~ 18051227 (-)
G1222653 NA non-coding downstream 335318 18048387 ~ 18048644 (-)
G1223107 NA non-coding upstream 12362 18397107 ~ 18400718 (-)
G1223164 NA non-coding upstream 62453 18447198 ~ 18447461 (-)
G1223165 NA non-coding upstream 63438 18448183 ~ 18448433 (-)
G1223189 NA non-coding upstream 74303 18459048 ~ 18459249 (-)
G1223241 NA non-coding upstream 110605 18495350 ~ 18495657 (-)
asb5a LOC101464329 other downstream 984727 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3065802 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3389583 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 3826581 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4669085 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1451133 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1748966 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1937033 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 2080985 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2338292 20723037 ~ 20723236 (-)

Expression


Co-expression Network