G1223920


Basic Information

Item Value
gene id G1223920
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18562885 ~ 18563615 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1397040
gacctggattaacctccacatcaccagaggaacagaagagaagtaggataagggtacggctaaagacaatacgaactggccgtctagcacgttcagaacagagagtaaaaggagcaggtttctgggcacgatagcatagattcaaggcatagtgtacagacaaaggtaaggtaggatgtgagtacattggaggtaaacctaggcattgagtaatgaagagagagatatagtctctagagatgtttaaaccaggtgatgtcatcgcatatgtaggaggtggaacaacatggttggttaaggcatattgagcagggctagatgatctacagtgaaataagacagtaatcactaaccaggacagtaatggacaaggcatattgatattagagagaggcatgcgtagccaagtgaacatatgggtccagtgagtggttgggctggctggggacacggcgattcagacagttagcaggctaacaagctaacagttagtaggccggagctaaacaagctagcagctagtagaccagggcaagctagcagttagcaggccgggttagcaagcaagctgttagcatgggctagcagtttgtagaccagggcaagctagcagttagcagaccgggttagcaagcaagcagttagcaagggctagcagttagcagaccgggcaggcaagctagcagttagcagacctggttagcaagcaagcagttagcatggTCTAGCAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1397040 True 731 lncRNA 0.48 1 18562885 18563615

Neighbor

gene id symbol gene type direction distance location
LOC110487745 NA coding downstream 320085 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 332752 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 549144 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 616993 17940927 ~ 17945892 (-)
LOC110488931 pdgfc coding downstream 785288 17704072 ~ 17777597 (-)
LOC110488940 LOC106604535 coding upstream 20765 18584380 ~ 18774367 (-)
LOC110487747 anxa5 coding upstream 580515 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 626626 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 633909 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 640163 19203778 ~ 19211568 (-)
G1223918 NA non-coding downstream 1830 18560746 ~ 18561055 (-)
G1223916 NA non-coding downstream 2931 18559754 ~ 18559954 (-)
G1223241 NA non-coding downstream 67228 18495350 ~ 18495657 (-)
G1223189 NA non-coding downstream 103636 18459048 ~ 18459249 (-)
G1223165 NA non-coding downstream 114452 18448183 ~ 18448433 (-)
G1223926 NA non-coding upstream 6513 18570128 ~ 18570384 (-)
G1223927 NA non-coding upstream 7410 18571025 ~ 18571346 (-)
G1223942 NA non-coding upstream 26984 18590599 ~ 18595648 (-)
G1224079 NA non-coding upstream 235659 18799274 ~ 18802232 (-)
G1224144 NA non-coding upstream 344580 18908195 ~ 18913089 (-)
asb5a LOC101464329 other downstream 1163650 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3244725 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3568506 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4005504 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 4848008 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 1272263 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1570096 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1758163 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1902115 20465730 ~ 20470523 (-)
G1225875 NA other upstream 2159422 20723037 ~ 20723236 (-)

Expression


Co-expression Network