G1224158


Basic Information

Item Value
gene id G1224158
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18940743 ~ 18945434 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1397303
CATATAATCAATTTTTACCCTTCTAGCCATCTTACCCATCtgacccttctaaccatcttacccatctaacccttctaaccatcggacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaacccttctaaccatcttactCTTCAAACCATTTTacccatctaatccattttacCCATCTAATCCATTTACCCTTCTAATCCATTTGACCCATCTAATCCAtttttacccttctaaccatctgaCCCTTCAAACCATCTTacccatctaatccattttacCCATCTAATCCATTTatccttctaaccattttacccttctaacccatctaatccattttacccttctaaccatcttacccttctaaccatcttacccaCCTTACACTTCTAACCCTTCTAATCCATCTAAACCTTCTAACCCATCTGACCATTCTAACCCTTCTAATCCATCTAACCCATTTTACCCTTCTAACCCATCTAATCCTTCTAACCCATTTTACCCTTCTGACAATTTTACCCTTCTGACCATCTAATCCattttacccttctaaccattttacccttctaaccatcttaccctTCTAATCCATCTAACCCTTTTAACCCATTTTACCTTTCTAATCACTTTAGCCTTCTAACCAATTTACCCTTCTAacccatctaatccattttacCATTCTAACCATTTTACCCTTCTGACCatctaacccatctaacccttctaaccatcttaccctTCAAACCATCTTACCCATCTAATCCATTTGACCCATCTAATCCATTTTCACCCTTCTGACCCTACAAACCATCTTacccatctaatccattttacCCATCTAATCCATTTTTACCCTTCTAATCATCtgacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaaccatcttacccatctAACCATTCTAACCATCggacccttctaaccatcttacccttcaaaccatcttacccatctaatccattttacccatctaatccatttttacccttctaaccatctgaCCCTTCAAACCATCTTACCCATCTAATCCAtttttacccttctaaccatctgaCCCTTCAAACCATCTTACCCATCTAATCCAtttttacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaacccttctaaccatcggacccttctaaccatctaatccatttttacccttctaaccatctgacccttctaaccatcttacccatatgacccttctaaccatcttacccatctaaccatcttacccatctAACCATTCTAACCATCggacccttctaaccatcttacccttcaaaccatcttacccatctaatccattttacccatctaatccatttttacccttctaaccatctgaCCCTTCAAACCATCTTACCCATCTAATCCAtttttacccttctaaccatctgaCCCTTCAAACCATCTTACCCATCTAATCCAtttttacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaacccttctaaccatcggacccttctaaccatctaatccatttttacccttctaaccatctgagccttctaaccatcttacccatcggacccttctaaccatcttacccatctaaccatcttacccatctAACCATTCTAACCATCggacccttctaaccatcttacccttcaaaccatcttacccatctaatccattttacccatctaatccatttttacccttctaaccatctgaCCCTTCAAACCATCTGACCCATCTAATCCAtttttacccttctaaccatctgaCCCTTCAAACCATCTTACCCATCTAATCCAtttttacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaacccttctaaccatcggacccttctaaccatcttacccatctgacccttctaaccatcttacccatctaacccttctaaccatc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1397303 True 2035 lncRNA 0.40 2 18940743 18945434

Neighbor

gene id symbol gene type direction distance location
LOC110488940 LOC106604535 coding downstream 166376 18584380 ~ 18774367 (-)
LOC110487745 NA coding downstream 697943 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 710610 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 927002 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 994851 17940927 ~ 17945892 (-)
LOC110487747 anxa5 coding upstream 198696 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 244807 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 252090 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 258344 19203778 ~ 19211568 (-)
LOC118938702 NA coding upstream 278340 19223774 ~ 19239151 (-)
G1224144 NA non-coding downstream 27654 18908195 ~ 18913089 (-)
G1224079 NA non-coding downstream 138511 18799274 ~ 18802232 (-)
G1223942 NA non-coding downstream 345095 18590599 ~ 18595648 (-)
G1223927 NA non-coding downstream 369397 18571025 ~ 18571346 (-)
G1223926 NA non-coding downstream 370359 18570128 ~ 18570384 (-)
G1224150 NA non-coding upstream 10801 18956235 ~ 18959273 (-)
G1224182 NA non-coding upstream 45144 18990578 ~ 18990819 (-)
G1224181 NA non-coding upstream 45733 18991167 ~ 18992894 (-)
G1224185 NA non-coding upstream 50025 18995459 ~ 18995803 (-)
G1224240 NA non-coding upstream 121150 19066584 ~ 19067325 (-)
asb5a LOC101464329 other downstream 1541508 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3622583 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3946364 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4383362 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5225866 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 890444 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1188277 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1376344 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1520296 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1777603 20723037 ~ 20723236 (-)

Expression


Co-expression Network