G1224150


Basic Information

Item Value
gene id G1224150
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 18956235 ~ 18959273 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1397293
GTTTATTGGCACACATAATGGCAAAGCATACATACCAGACATCAGATATGACACAAAACATCTCTGCGATATAATGTACAAATTGTGCAGAGTTCTAATAATACCAGGTTCACACCTATTCAGAAATGTGTTAGCTTCCTTACAAATGCACAAATAAATACACAAAAGACCCAAACGTTGTCTTCTTGCCTTTAAGAAACAAAATCCAACAGaagagtagactagaggagatgaggggggaaTCAAGTCAAAGAACAACTGGTAACACTAAAGGAGGGGTTTTAAAACTGCATTTCTGTAGGGCCTTGAGTATGCTGGTTTTTGCtcaataatttgcaaattatgtatACTGAACGAAAACATGTatgcaacatgcaaccatttcaacgattttactaagttacagttcatataagtaaatcagtatttttgaaataaatgaattagaccctaatctatagatttcacatgactgggcaggggcgcagccatgcgTGGGCCTGGGAGGCTTAGGCcgacccactggggagccaggcccagccaatccgAATGAGTTTTCCTCacgaaagggctttattacaagacataaatactcctcagtttcatcaactgtctgggtggttggtctcagatgatcccgcaggtgaagaagccggatgtggaggtcctgggctggcatggttacatgtagtctgcggttgtgaggacgTTTGGAcgttctgccaaattctctaaaactacattggaggtggcttatggtagagaaattaacattcaattctttggcaacagctctggtggacattcctgcagtcagcatgccaattgcaagctccctcaaaacttgagacatctgtggcattgggttgtgtgacaaaTTTTTGTGGCCTTTATTTTctccaacacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttctaatgccacacctgtcaggtggatggattatcttggcaaaggagaaatgcttactaatagggatgtaaacaaatttgtgcacaaaattggagagaaatacgctttttgtgtgtatggaaaatatctggaatcttttgtttcagctcatgaaacatgggaccaacacttcacatgttgttatatttttgttcagtatatcttTAATATGCCTCCATTGAGACTAAAATGTTGTTTAAGATATGACTTCTGCATTAAATAAATGACTGGatataaacaaaacaataaatgtgctgCTAATAGCAGCAGAAATCGGTCAGACAAACAACCAGAATCCAAAATGCCCTATAGAAATGTGAAACTCATACAAATCAAAAAGCTTGTTGAAACAGCTGCCATGTACAGTACAAAATGGATTCAGAATGGTGGCTAATCTTAAATGGATAAAATTGTAGTTCACACCTCTATTTACAGAGCACAGAGCTAGTTAGAGGACTCATCCTTATATCTGTGCCATTTTAGAATCTGTGACAGCATGAGCAACCCATTGAGGCTACAACCCATAGAAATCCCTACctagttgactactttaaaatgaagGAAGCTGGaaggcctcaatggcgctgctcCTGGTAAAACggtctctatcattctctatgttACAGAGTTAGAAACCTTGTAACAGTGTTCCCAAACTGATGAATAAAATGGCGGTGTCACAAAAAGGtacataatatactgtatttatttatttatcctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccagggaacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcagctcgaggattcgatccagcaacctttcggttactggcccaacgctctaaccactaggctacctgcctccctgtactgtacagtacagtaccagtcaaaagtttggacacacctactcattcaaggatttttatctttatttttactattttctacattgtagaataatagcgaagacatcaaaactattaaataacacatatggaatcatatagtaatgaaaaaagtgttaaatcaaatattttagattcttcaaatagacaccctttgcacactcttggtattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgggcacttgttgtctgctttgggttgaggtggggtgattgtggaggccaggtcatctgatgcagctctccatcactttccttcttggtcaaatatccatCCATTCtaatctgcgtctcacaaaggcacAGCGGTTGGAAACTAAAATCCCAAATTTGGACcaaagaccaaaggacagattttgaCTGGTCcaatgtccattactcgtgtttcttagcccaagcaagtctcttcttcttattggtgtcctttagtagtgggttctttgcagcaattcgtccatgaaggtctgattcacgcagcctcctatgaacagttgatgttgagatgtgtctgttacttgagctctgtgaagcatttatttggcctgcaatttctgaggctggtaacgctaatgaacttatcctctgcagcagaggtaactctgggtctcatGAGAGCGgtccacatgagagccagtttcatcatagagcttgatggtttttgcgactgcacatgaagaaactttcaaagttcttaaagttttccgtattgactgaccttcatgtcttaaagcgaTGATGGACTggcatttctctttgcttatttgagctgttcatccCATAATATatatttggtcttttaccaagtatggctatcttctgtctaccacccttaccttgtcacaacacaacggattggctcaaacgcattagggaggaaataacttttttttaagtacttttaacaaggcatacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagactgtgcaaagctgtcatcaaggcaaagggtgtctactttgaagaatctcaaatatattttgatttgtttaaca
>TU1397294
tgttaaatcaaatattttagattcttcaaatagacaccctttgcacactcttggtattctctcaaccagcttcacctggaatgcttttccaacagtcttgaaggagttcccacatatgctgggcacttgttgtctgctttgggttgaggtggggtgattgtggaggccaggtcatctgatgcagctctccatcactttccttcttggtcaaatatccatCCATTCtaatctgcgtctcacaaaggcacAGCGGTTGGAAACTAAAATCCCAAATTTGGACcaaagaccaaaggacagattttgaCTGGTCcaatgtccattactcgtgtttcttagcccaagcaagtctcttcttcttattggtgtcctttagtagtgggttctttgcagcaattcgtccatgaaggtctgattcacgcagcctcctatgaacagttgatgttgagatgtgtctgttacttgagctctgtgaagcatttatttggcctgcaatttctgaggctggtaacgctaatgaacttatcctctgcagcagaggtaactctgggtctcatGAGAGCGgtccacatgagagccagtttcatcatagagcttgatggtttttgcgactgcacatgaagaaactttcaaagttcttaaagttttccgtattgactgaccttcatgtcttaaagcgaTGATGGACTggcatttctctttgcttatttgagctgttcatccCATAATATatatttggtcttttaccaagtatggctatcttctgtctaccacccttaccttgtcacaacacaacggattggctcaaacgcattagggaggaaataacttttttttaagtacttttaacaaggcatacctgttaattgaaatgcattccaggtgactacctcatgaagctggttgagagaatgccaagactgtgcaaagctgtcatcaaggcaaagggtgtctactttgaagaatctcaaatatattttgatttgtttaaca
>TU1397290
GTTTATTGGCACACATAATGGCAAAGCATACATACCAGACATCAGATATGACACAAAACATCTCTGCGATATAATGTACAAATTGTGCAGAGTTCTAATAATACCAGGTTCACACCTATTCAGAAATGTGTTAGCTTCCTTACAAATGCACAAATAAATACACAAAAGACCCAAACGTTGTCTTCTTGCCTTTAAGAAACAAAATCCAACAGaagagtagactagaggagatgaggggggaaTCAAGTCAAAGAACAACTGGTAACACTAAAGGAGGGGTTTTAAAACTGCATTTCTGTAGGGCCTTGAGTATGCTGGTTTTTGCtcaataatttgcaaattatgtatACTGAACGAAAACATGTatgcaacatgcaaccatttcaacgattttactaagttacagttcatataagtaaatcagtatttttgaaataaatgaattagaccctaatctatagatttcacatgactgggcaggggcgcagccatgcgTGGGCCTGGGAGGCTTAGGCcgacccactggggagccaggcccagccaatccgAATGAGTTTTCCTCacgaaagggctttattacaagacataaatactcctcagtttcatcaactgtctgggtggttggtctcagatgatcccgcaggtgaagaagccggatgtggaggtcctgggctggcatggttacatgtagtctgcggttgtgaggacgTTTGGAcgttctgccaaattctctaaaactacattggaggtggcttatggtagagaaattaacattcaattctttggcaacagctctggtggacattcctgcagtcagcatgccaattgcaagctccctcaaaacttgagacatctgtggcattgggttgtgtgacaaaTTTTTGTGGCCTTTATTTTctccaacacaaggtgcacctgtgtaatgatcatgctgtttaatcagcttcttctaatgccacacctgtcaggtggatggattatcttggcaaaggagaaatgcttactaatagggatgtaaacaaatttgtgcacaaaattggagagaaatacgctttttgtgtgtatggaaaatatctggaatcttttgtttcagctcatgaaacatgggaccaacacttcacatgttgttatatttttgttcagtatatcttTAATATGCCTCCATTGAGACTAAAATGTTGTTTAAGATATGACTTCTGCATTAAATAAATGACTGGatataaacaaaacaataaatgtgctgCTAATAGCAGCAGAAATCGGTCAGACAAACAACCAGAATCCAAAATGCCCTATAGAAATGTGAAACTCATACAAATCAAAAAGCTTGTTGAAACAGCTGCCATGTACAGTACAAAATGGATTCAGAATGGTGGCTAATCTTAAATGGATAAAATTGTAGTTCACACCTCTATTTACAGAGCACAGAGCTAGTTAGAGGACTCATCCTTATATCTGTGCCATTTTAGAATCTGTGACAGCATGAGCAACCCATTGAGGCTACAACCCATAGAAATCCCTACctagttgactactttaaaatgaagGAAGCTGGaaggcctcaatggcgctgctcCTGGTAAAACggtctctatcattctctatgttACAGAGTTAGAAACCTTGTAACAGTGTTCCCAAACTGATGAATAAAATGGCGGTGTCACAAAAAGGtacataatatactgtatttatttatttatcctttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaccagggaacagtgggttaactgccttgttcaggggcagaacgacagatttttaccttgtcagctcgaggattcgatccagcaacctttcggttactggcccaacgctctaaccactaggctacctgcctccctgtactgtacagtacagtaccagtcaaaagtttggacacacctactcattcaagg

Function

NR:

description
hypothetical protein EH28_23780

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1397293 False 3039 lncRNA 0.40 1 18956235 18959273
TU1397294 False 990 lncRNA 0.42 1 18956235 18957224
TU1397290 True 1948 lncRNA 0.40 1 18957326 18959273

Neighbor

gene id symbol gene type direction distance location
LOC110488940 LOC106604535 coding downstream 181868 18584380 ~ 18774367 (-)
LOC110487745 NA coding downstream 713435 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 726102 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 942494 18004553 ~ 18013741 (-)
LOC110489474 NA coding downstream 1010343 17940927 ~ 17945892 (-)
LOC110487747 anxa5 coding upstream 184857 19144130 ~ 19164344 (-)
LOC110488948 ccna2 coding upstream 230968 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 238251 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 244505 19203778 ~ 19211568 (-)
LOC118938702 NA coding upstream 264501 19223774 ~ 19239151 (-)
G1224158 NA non-coding downstream 10801 18940743 ~ 18945434 (-)
G1224144 NA non-coding downstream 43146 18908195 ~ 18913089 (-)
G1224079 NA non-coding downstream 154003 18799274 ~ 18802232 (-)
G1223942 NA non-coding downstream 360587 18590599 ~ 18595648 (-)
G1223927 NA non-coding downstream 384889 18571025 ~ 18571346 (-)
G1224182 NA non-coding upstream 31305 18990578 ~ 18990819 (-)
G1224181 NA non-coding upstream 31894 18991167 ~ 18992894 (-)
G1224185 NA non-coding upstream 36186 18995459 ~ 18995803 (-)
G1224240 NA non-coding upstream 107311 19066584 ~ 19067325 (-)
G1224305 NA non-coding upstream 217731 19177004 ~ 19177610 (-)
asb5a LOC101464329 other downstream 1557000 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3638075 15317793 ~ 15318160 (-)
G1218808 NA other downstream 3961856 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4398854 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5241358 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 876605 19835878 ~ 19836319 (-)
G1225499 NA other upstream 1174438 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1362505 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1506457 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1763764 20723037 ~ 20723236 (-)

Expression


Co-expression Network