G1224308 (LOC106613263)


Basic Information

Item Value
gene id G1224308
gene name LOC106613263
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19181622 ~ 19181945 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1397461
ggccagtacatcaggagacgtggaggaggccgtaggagggcaacaacccagcagcaggaccgctacctccgcctttgtgcaaggaggagcaggaggagcactgccagagccctgcaaattgacctccagcaggccacaaatgtgcatgtgtctgctcaaacggtcagaaacagactacatgagggtggtatgagggcccgacgtccacaggtgggggttgtgcttacagcccaacacagtgcaggatgtttggcatttgccagagaacaccaagattggcaaattcgccactggcgccctgtgctcttcacagatgaaagcagg

Function

NR:

description
PREDICTED: uncharacterized protein LOC109523355 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1397461 True 324 lncRNA 0.57 1 19181622 19181945

Neighbor

gene id symbol gene type direction distance location
LOC110487747 anxa5 coding downstream 17278 19144130 ~ 19164344 (-)
LOC110488940 LOC106604535 coding downstream 407255 18584380 ~ 18774367 (-)
LOC110487745 NA coding downstream 938822 18240679 ~ 18242800 (-)
LOC110488938 LOC106604531 coding downstream 951489 18225268 ~ 18230133 (-)
gask1b fam198b coding downstream 1167881 18004553 ~ 18013741 (-)
LOC110488948 ccna2 coding upstream 8296 19190241 ~ 19195081 (-)
bbs7 bbs7 coding upstream 15579 19197524 ~ 19203622 (-)
tmem33 LOC106604543 coding upstream 21833 19203778 ~ 19211568 (-)
LOC118938702 NA coding upstream 41829 19223774 ~ 19239151 (-)
limch1b LOC106604545 coding upstream 101253 19283198 ~ 19429045 (-)
G1224306 NA non-coding downstream 1677 19179605 ~ 19179945 (-)
G1224305 NA non-coding downstream 4012 19177004 ~ 19177610 (-)
G1224240 NA non-coding downstream 114297 19066584 ~ 19067325 (-)
G1224185 NA non-coding downstream 185819 18995459 ~ 18995803 (-)
G1224181 NA non-coding downstream 188728 18991167 ~ 18992894 (-)
G1224320 NA non-coding upstream 38722 19220667 ~ 19309671 (-)
G1224344 NA non-coding upstream 70460 19252405 ~ 19308550 (-)
G1224534 NA non-coding upstream 318653 19500598 ~ 19500829 (-)
G1224547 NA non-coding upstream 325064 19507009 ~ 19507209 (-)
G1224564 NA non-coding upstream 337134 19519079 ~ 19519366 (-)
asb5a LOC101464329 other downstream 1782387 17395671 ~ 17399280 (-)
G1219208 NA other downstream 3863462 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4187243 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4624241 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5466745 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 653933 19835878 ~ 19836319 (-)
G1225499 NA other upstream 951766 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 1139833 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 1283785 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1541092 20723037 ~ 20723236 (-)

Expression


Co-expression Network