G1224564


Basic Information

Item Value
gene id G1224564
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19519079 ~ 19519366 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1397757
ttattcctctctcctacagcgtccattacaattacatgcacatggccaattatgcaaattaggtgatgacgtcatttagcgacttttaggacagccaatagctactttccttactgtggagttggcaacactgcatattgtttgtttttttggctGTTCCAGTACACTTTTTTTATTGAGACTTGTTGAAGTTCGGTAGccaaagtctacgccccttcatcAGCGATTGGCAGAAGGGAAACATTCTGCCGATATTGAAGCATTGCATCAACAAAGTGGCTCTGAgaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1397757 True 288 lncRNA 0.42 1 19519079 19519366

Neighbor

gene id symbol gene type direction distance location
limch1b LOC106604545 coding downstream 90034 19283198 ~ 19429045 (-)
LOC118938702 NA coding downstream 279928 19223774 ~ 19239151 (-)
tmem33 LOC106604543 coding downstream 307511 19203778 ~ 19211568 (-)
bbs7 bbs7 coding downstream 315457 19197524 ~ 19203622 (-)
LOC110488948 ccna2 coding downstream 323998 19190241 ~ 19195081 (-)
LOC118938704 NA coding upstream 201594 19720960 ~ 19722934 (-)
LOC110488956 LOC106604549 coding upstream 218841 19738207 ~ 19753902 (-)
LOC110488957 LOC100136484 coding upstream 236639 19756005 ~ 19771671 (-)
LOC110488958 trpc3 coding upstream 270420 19789786 ~ 19845909 (-)
LOC110488960 LOC106604553 coding upstream 429002 19948368 ~ 19960700 (-)
G1224547 NA non-coding downstream 11870 19507009 ~ 19507209 (-)
G1224534 NA non-coding downstream 18250 19500598 ~ 19500829 (-)
G1224320 NA non-coding downstream 209408 19220667 ~ 19309671 (-)
G1224344 NA non-coding downstream 210529 19252405 ~ 19308550 (-)
G1224308 LOC106613263 non-coding downstream 337134 19181622 ~ 19181945 (-)
G1224930 NA non-coding upstream 129760 19649126 ~ 19649978 (-)
G1224932 NA non-coding upstream 131794 19651160 ~ 19651972 (-)
G1224950 NA non-coding upstream 151218 19670584 ~ 19671049 (-)
G1224958 NA non-coding upstream 158383 19677749 ~ 19677951 (-)
G1224961 NA non-coding upstream 166450 19685816 ~ 19686103 (-)
asb5a LOC101464329 other downstream 2119844 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4200919 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4524700 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 4961698 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5804202 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 316512 19835878 ~ 19836319 (-)
G1225499 NA other upstream 614345 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 802412 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 946364 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1203671 20723037 ~ 20723236 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G178348 NA non-coding NC_053128.1 CM020925.1 28211159 ~ 28211592 (+)
mexican tetra (Astyanax mexicanus) G178201 NA non-coding NC_035916.1 CM008319.1 21515588 ~ 21515985 (-)