G1224930


Basic Information

Item Value
gene id G1224930
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19649126 ~ 19649978 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398148
CGCTTTATACATTGGAATTGCATTCAGTATTCACAGGGACATTTTCCTTGGGGATATCTTCATGAAAGAAAACAACTTTAATTTAAGTAAGCAATTTATTAGTTCATTTTGTACTCTAATTTGATTAGCGTGTTAGGGCAAGGGCTCCCAATTGCCAATGATTAGATTTCACAGGTCTGGCAGAAGTAGGAAGACATCAAATTGTGGATTGGAGCACATTTTTAGATTAGAAATCAAATGAGCAATACAGAAATAGAAGTGAAATATGGCttcaaacaaaaatgtatttataaaaatgAACCGCTTTTAGATATGGAAAATGTAACCCAAGAATTAAGCTTTGTCCCCACACAGCAGGTGAATCCAAATTATTTTAAGATTAACAACATTCACCAAGTGAATCAACTAGTAATGATCCACTGTATTCACAAAGCTTTCACTGCATTTCTATATATTCCCAGAGTAAAACATTTGAcataaacatacagttgaagtcttaaggacaacaacggcttaaggacaacaaagtcaaggtattggagtggccataacaaagccctgacctcaatcctatagaaaagttgcaggcagaactgaaaaagcgtgtgcgagcaaggaggcctacaaaccggactcagttacaccagctctgtcaggaggaatgggccaaaattcacccaatttattgtgagaagcttgtggaaagttacacgaaacgtttgactcaagttaaaaaatgtaaaggcaatgctaccaaatactatgagtgtgtatgtaaacttctgacccactgggaatgtgatgaaataaataaaagctgaaataaatcactctctctactattattctgaca

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398148 True 853 lncRNA 0.36 1 19649126 19649978

Neighbor

gene id symbol gene type direction distance location
limch1b LOC106604545 coding downstream 220081 19283198 ~ 19429045 (-)
LOC118938702 NA coding downstream 409975 19223774 ~ 19239151 (-)
tmem33 LOC106604543 coding downstream 437558 19203778 ~ 19211568 (-)
bbs7 bbs7 coding downstream 445504 19197524 ~ 19203622 (-)
LOC110488948 ccna2 coding downstream 454045 19190241 ~ 19195081 (-)
LOC118938704 NA coding upstream 70982 19720960 ~ 19722934 (-)
LOC110488956 LOC106604549 coding upstream 88229 19738207 ~ 19753902 (-)
LOC110488957 LOC100136484 coding upstream 106027 19756005 ~ 19771671 (-)
LOC110488958 trpc3 coding upstream 139808 19789786 ~ 19845909 (-)
LOC110488960 LOC106604553 coding upstream 298390 19948368 ~ 19960700 (-)
G1224564 NA non-coding downstream 129760 19519079 ~ 19519366 (-)
G1224547 NA non-coding downstream 141917 19507009 ~ 19507209 (-)
G1224534 NA non-coding downstream 148297 19500598 ~ 19500829 (-)
G1224320 NA non-coding downstream 339455 19220667 ~ 19309671 (-)
G1224344 NA non-coding downstream 340576 19252405 ~ 19308550 (-)
G1224932 NA non-coding upstream 1182 19651160 ~ 19651972 (-)
G1224950 NA non-coding upstream 20606 19670584 ~ 19671049 (-)
G1224958 NA non-coding upstream 27771 19677749 ~ 19677951 (-)
G1224961 NA non-coding upstream 35838 19685816 ~ 19686103 (-)
G1224968 NA non-coding upstream 46104 19696082 ~ 19696450 (-)
asb5a LOC101464329 other downstream 2249891 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4330966 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4654747 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 5091745 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5934249 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 185900 19835878 ~ 19836319 (-)
G1225499 NA other upstream 483733 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 671800 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 815752 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1073059 20723037 ~ 20723236 (-)

Expression


Co-expression Network