G1224932


Basic Information

Item Value
gene id G1224932
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19651160 ~ 19651972 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398150
ctcttgtttacaatgacggcctaccaaaaggactcctgtggggacgggggcctgggattaaaaatctaaaataaatacaatataaatataagacaaaacacacatcgcAACAACAGAGACACAACGCTACATAAaggcctaagacaacaacatagcaaggcagcaacacatgacaacacagcatggtagcaacacaacataacaacaacaacatgatagcaacacaacatgggagcagcacaaaacatggtacaaacataattgggcacagacaacagcacaaagggcaggaaggtagagacaacaatacatcacacaaagcaggcacaactgtcagtaagagtgtccatgattgagtctttgaatgaagagattgagataaaactgtccagtttgagtgtttgttgcagctagttccagtcgctagctgcagcgaactgaaaagaggagcgacccagggatgtgtgtgctttggggacctttaacagaatgtgactggcagaacgggtgttgtatgtgcaggatgagggctgcagtagatatctcagataggaggGTGTGAGGCCTTACAGGggtttataaataagcatcaaccagtgggtcttgcgacgggtatacagagatgaccagtttacagaggagtatagagagcaTTATGTGggtaataataacatttgaaaaaTACATCTTCTGCAGTTCTTTGATCTTCCACAACTTATATCTGCAATAATGTCTGACAGTATCCAGATTACCATCAAACAGTTTTTACGAGATTAAAATCAGAACGTTTAAAAACTTCATGTAGAAATGAAG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398150 True 813 lncRNA 0.42 1 19651160 19651972

Neighbor

gene id symbol gene type direction distance location
limch1b LOC106604545 coding downstream 222115 19283198 ~ 19429045 (-)
LOC118938702 NA coding downstream 412009 19223774 ~ 19239151 (-)
tmem33 LOC106604543 coding downstream 439592 19203778 ~ 19211568 (-)
bbs7 bbs7 coding downstream 447538 19197524 ~ 19203622 (-)
LOC110488948 ccna2 coding downstream 456079 19190241 ~ 19195081 (-)
LOC118938704 NA coding upstream 68988 19720960 ~ 19722934 (-)
LOC110488956 LOC106604549 coding upstream 86235 19738207 ~ 19753902 (-)
LOC110488957 LOC100136484 coding upstream 104033 19756005 ~ 19771671 (-)
LOC110488958 trpc3 coding upstream 137814 19789786 ~ 19845909 (-)
LOC110488960 LOC106604553 coding upstream 296396 19948368 ~ 19960700 (-)
G1224930 NA non-coding downstream 1182 19649126 ~ 19649978 (-)
G1224564 NA non-coding downstream 131794 19519079 ~ 19519366 (-)
G1224547 NA non-coding downstream 143951 19507009 ~ 19507209 (-)
G1224534 NA non-coding downstream 150331 19500598 ~ 19500829 (-)
G1224320 NA non-coding downstream 341489 19220667 ~ 19309671 (-)
G1224950 NA non-coding upstream 18612 19670584 ~ 19671049 (-)
G1224958 NA non-coding upstream 25777 19677749 ~ 19677951 (-)
G1224961 NA non-coding upstream 33844 19685816 ~ 19686103 (-)
G1224968 NA non-coding upstream 44110 19696082 ~ 19696450 (-)
G1224969 NA non-coding upstream 45047 19697019 ~ 19697383 (-)
asb5a LOC101464329 other downstream 2251925 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4333000 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4656781 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 5093779 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5936283 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 183906 19835878 ~ 19836319 (-)
G1225499 NA other upstream 481739 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 669806 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 813758 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1071065 20723037 ~ 20723236 (-)

Expression


Co-expression Network