G1224961



Basic Information


Item Value
gene id G1224961
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19685816 ~ 19686103 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1398180
gttctttccacagattctcgattggattcaggtctggactttgacttggccattctaacacctggatatgtttattgttgaaccattccattgtagattttgctttatgttttggatcattgtcttgttggaagacaaatctccgtcccagtctcaggtcttttgcagactccatcaggttttcttccagaatggtcctgtatttggctccatccatcttcccatcaattttaaccatcttccctgtccctgctgaagaaaagcaggcccaaaccatgatgctgccac

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1398180 True 288 lncRNA 0.43 1 19685816 19686103

Neighbor


gene id symbol gene type direction distance location
limch1b LOC106604545 coding downstream 256771 19283198 ~ 19429045 (-)
LOC118938702 NA coding downstream 446665 19223774 ~ 19239151 (-)
tmem33 LOC106604543 coding downstream 474248 19203778 ~ 19211568 (-)
bbs7 bbs7 coding downstream 482194 19197524 ~ 19203622 (-)
LOC110488948 ccna2 coding downstream 490735 19190241 ~ 19195081 (-)
LOC118938704 NA coding upstream 34857 19720960 ~ 19722934 (-)
LOC110488956 LOC106604549 coding upstream 52104 19738207 ~ 19753902 (-)
LOC110488957 LOC100136484 coding upstream 69902 19756005 ~ 19771671 (-)
LOC110488958 trpc3 coding upstream 103683 19789786 ~ 19845909 (-)
LOC110488960 LOC106604553 coding upstream 262265 19948368 ~ 19960700 (-)
G1224958 NA non-coding downstream 7865 19677749 ~ 19677951 (-)
G1224950 NA non-coding downstream 14767 19670584 ~ 19671049 (-)
G1224932 NA non-coding downstream 33844 19651160 ~ 19651972 (-)
G1224930 NA non-coding downstream 35838 19649126 ~ 19649978 (-)
G1224564 NA non-coding downstream 166450 19519079 ~ 19519366 (-)
G1224968 NA non-coding upstream 9979 19696082 ~ 19696450 (-)
G1224969 NA non-coding upstream 10916 19697019 ~ 19697383 (-)
G1225011 NA non-coding upstream 90899 19777002 ~ 19777276 (-)
G1225034 NA non-coding upstream 130200 19816303 ~ 19816593 (-)
G1225035 NA non-coding upstream 130571 19816674 ~ 19817082 (-)
asb5a LOC101464329 other downstream 2286581 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4367656 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4691437 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 5128435 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 5970939 13683784 ~ 13715500 (-)
G1225043 LOC108238713 other upstream 149775 19835878 ~ 19836319 (-)
G1225499 NA other upstream 447608 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 635675 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 779627 20465730 ~ 20470523 (-)
G1225875 NA other upstream 1036934 20723037 ~ 20723236 (-)

Expression



Co-expression Network