G1225043 (LOC108238713)


Basic Information

Item Value
gene id G1225043
gene name LOC108238713
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 19835878 ~ 19836319 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398282
gtcgacttctgtgtgatgttttgttcaggttcatcaaagaaaacagttgttcacacaggtatgtgctgccaaacatagacaacgtttgagcagcctggatgcgcagctggggcattgtgccggggaggaaacgggcaaactccgcagcacccactgccgcatatttttccctcagtgcatcattgcattggaggtcaatcaactccatttggaggtttggtggtgagctttccacgtcaacagcaaatgggttaccgagcagttccaacctgcttttttgtgcttcaaagtcagcaaatcggcgtcgaaagtcagtggtaagcatacctattttatcagccaactgtgggctcgggaacgcactggtagagagcttctctttcatggtctggcagctgggaaagtggctcaaattttctttccgcatctgcgtctcccacag

Function

NR:

description
putative general transcription factor II-I repeat domain containing protein 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398282 True 442 TUCP 0.50 1 19835878 19836319

Neighbor

gene id symbol gene type direction distance location
LOC110488957 LOC100136484 coding downstream 64207 19756005 ~ 19771671 (-)
LOC110488956 LOC106604549 coding downstream 81976 19738207 ~ 19753902 (-)
LOC118938704 NA coding downstream 112944 19720960 ~ 19722934 (-)
limch1b LOC106604545 coding downstream 406833 19283198 ~ 19429045 (-)
LOC118938702 NA coding downstream 596727 19223774 ~ 19239151 (-)
LOC110488960 LOC106604553 coding upstream 112049 19948368 ~ 19960700 (-)
LOC118938705 NA coding upstream 279206 20115525 ~ 20130254 (-)
LOC110488962 LOC106604433 coding upstream 298860 20135091 ~ 20165062 (-)
mcts1 tma20 coding upstream 369934 20206253 ~ 20215508 (-)
LOC110488967 LOC106604437 coding upstream 429665 20265984 ~ 20273649 (-)
G1225038 NA non-coding downstream 12048 19823610 ~ 19823830 (-)
G1225037 NA non-coding downstream 13403 19822221 ~ 19822475 (-)
G1225035 NA non-coding downstream 18796 19816674 ~ 19817082 (-)
G1225034 NA non-coding downstream 19285 19816303 ~ 19816593 (-)
G1225011 NA non-coding downstream 58602 19777002 ~ 19777276 (-)
G1225129 NA non-coding upstream 130374 19966693 ~ 19966917 (-)
G1225429 NA non-coding upstream 175957 20012276 ~ 20012477 (-)
G1225436 NA non-coding upstream 184229 20020548 ~ 20020777 (-)
G1225440 NA non-coding upstream 191317 20027636 ~ 20027874 (-)
G1225444 NA non-coding upstream 194467 20030786 ~ 20031085 (-)
asb5a LOC101464329 other downstream 2436643 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4517718 15317793 ~ 15318160 (-)
G1218808 NA other downstream 4841499 14993820 ~ 14994379 (-)
LOC110488886 LOC106604622 other downstream 5278497 14542673 ~ 14642681 (-)
LOC110488853 LOC106604605 other downstream 6121001 13683784 ~ 13715500 (-)
G1225499 NA other upstream 297392 20133711 ~ 20134053 (-)
G1225505 upf3b other upstream 485459 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 629411 20465730 ~ 20470523 (-)
G1225875 NA other upstream 886718 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 2392000 22228319 ~ 22233369 (-)

Expression


Co-expression Network