XLOC_003128 (si:dkey-40c23.1)


Basic Information

Item Value
gene id XLOC_003128
gene name si:dkey-40c23.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 1575435 ~ 1582456 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00006177
CTAGTTTTTACGCGTCTTAAAGCCTGAAACTACGATTAGGATTGTTtactaatattttaattcataataGTGTATGATAGATGGCTTTTGATAcaataattcacatttatttataatctGTCGATGTGTGCGTGTTAAAATCCACAGTTCCCTCATGAAAACAGAGATTAGCTTTCATTTTCGCTTCAGTGTCAGTTTCTCAGGTAAAACACTGACAGCTCGCATTTATCGCTCCAACACTGTTTAAAAAGGGCTTCACTTGAACGTCGACAGACATTGACGCCTGCAGCCAAAGTTTTCTCTCAGTTGTGTTTGTTGGTCAGTCTCAGACATGGCAGAGGGATTCAGGTCAATGGAGATGGGCGAATATGACTTATATACAGCAGGTGATGAAGACTCGAGGTCCAGTTTGTCAGACTGGAAGCATCTAAACCTTATTATGGATCGGCCAAGCTTACTGCTAGAGGAGGATCTTTATACTGCTGGTAATGAAAGACCCAAACCTTCAGCACCACTGGATATCGGTAAATTAAGGATTAAAGTGGACTGGACTGAAGCATTTCCAGACAGATGGAGAGCAAGATTACAGATCGCCCTTCAGACGTGGTTGTCAAAACTAGAAGAAAATGCTACGGTCCACAGTATTAAGCTCATGGATGATCCGTCATTTGCAGAAGTGCAGATAACTCCATCAACAGCTCTAGAAGCTTTGGAGAAGCTGAAGTTTATACCTTTgaggtttaaaaatgaaaacagggAAGTGACTGCGTGGATCTGTCCGGATGGAGCAACTTATGTGAATGTACCACACAAGTCCTTGCTGGAGGGGAACAGAGCTACTTTACTAGAGG
>TCONS_00006178
CTAGTTTTTACGCGTCTTAAAGCCTGAAACTACGATTAGGATTGTTtactaatattttaattcataataGTGTATGATAGATGGCTTTTGATAcaataattcacatttatttataatctGTCGATGTGTGCGTGTTAAAATCCACAGTTCCCTCATGAAAACAGAGATTAGCTTTCATTTTCGCTTCAGTGTCAGTTTCTCAGGTAAAACACTGACAGCTCGCATTTATCGCTCCAACACTGTTTAAAAAGGGCTTCACTTGAACGTCGACAGACATTGACGCCTGCAGCCAAAGTTTTCTCTCAGTTGTGTTTGTTGGTCAGTCTCAGACATGGCAGAGGGATTCAGGTCAATGGAGATGGGCGAATATGACTTATATACAGCAGGTGATGAAGACTCGAGGTCCAGTTTGTCAGACTGGAAGCATCTAAACCTTATTATGGATCGGCCAAGCTTACTGCTAGAGGAGGATCTTTATACTGCTGGTAATGAAAGACCCAAACCTTCAGCACCACTGGATATCGGTAAATTAAGGATTAAAGTGGACTGGACTGAAGCATTTCCAGACAGATGGAGAGCAAGATTACAGATCGCCCTTCAGACGTGGTTGTCAAAACTAGAAGAAAATGCTACGGTCCACAGTATTAAGCTCATGGATGATCCGTCATTTGCAGAAGTGCAGATAACTCCATCAACAGCTCTAGAAGCTTTGGAGAAGCTGAAGTTTATACCTTTgaggtttaaaaatgaaaacagggAAGTGACTGCGTGGATCTGTCCGGATGGAGCAACTTATGTGAATGTACCACACAAGTCCTTGCTGGAGGGGAACAGAGCTACTTTACTAGAGGTGAACAAGGCCACGTCTGGGACATCTGAGGAagcaaataaagcaaataatgtTGAGAATATCACTGCATGTATTAAATCTCAAAGTGAAACTGAGACTAATAAAACTACTAAGGTGGCCCCTGAGACATCAGTTCCATTGATTCTCCCACTCCATCTGTCCTGGTACATGCATAATGCTTATAGAAAGGACTTGGAAACAATTGGGAAACGGCATGGAGTCTTTATTTGTCCAGAAGTATCGATCGCAATCAAACCTACAGAGAACTCAAGGCTTGATTCTGTGTCTAAAGCCACTGAGGACTATCAGAAACTTCTTCAGAGATGTGCGGATGGTTTTAGTGATGCTACAGTTCATCATAATGACATGGATTCAGATATAGTGAAAAATGCCATTGATTCCATCAAGTCACAGAAGACAAAGCTGATGTTCACTCTGACTGACAGTGATGGCCTGTTTTTAGGACCAAAGAAATTCACAGACATGATTAAAGAAGAAACaagaagaagagaaagacagTCCAATAGTAGATCAATCCCAATGGACGTAGATGCTTACCCAATGGATGTAGACAGCAGTTTTCCCCCTCAAAGCAGACCTTCACTGCTCATGAGCACACGAGACCTTCCAACTCAACTTGAGATGGACGAGGTTCACTGGGATCTGATGAAGCTTTCCTATAAGGAACATTTATCAGATCTTGAAGCCAAATATGGGGTGTCATTTACTGCAGATCTTCATCAGGGGAATTTAGTTAAGGTTCAGGCTCGATCTAAAGGTGATCAGCATGTGAATCTCGAAGGTCACGCGGTCAGAGCTTTAACACACCTCTACCAGAAACTGGCGTCAGCAGCAGTGAGCTGTGAACTCAGAAAGCCTGCAGATCAAACTGATGTGAGATCAGTGATGGAGAAGCTTCAGCAGCGCTGTTGTGTTGTAGCAGCAGAGAGATTGAGCCGCTGGAGACTCACTGGACTGCCAGAACACCTCGGTCCTGCTATTGCTGAAACTGAGAAGATCCTTCAGAGGAAAGTGTTTGATGACAAGATGAAGACATCGATTGGTTACTCAGAGGATATTCCTTATGCTAGAGGAATCAAGATCGATTGATGCAtgatcagagcaggcaacgtttctccaatcttctattgtccagttttggtgagtctgtgtgaattgtagcctcagtttcctgttctcagctgacaggagcggcacccggtgtgctcttctgctgctttcccagtactgggttgtaggtGGATTTTttggctgcttgttcaaactacttatttaaaatgagctgaaacatgatttttatttgatttatgtttaatcaactCAAATTTGTtgttaacttaaatgatttgtattggaacaacataaataaattgtgtgaaaccctg

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000097592

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00006177 False 851 mRNA 0.42 6 1575435 1578493
TCONS_00006178 True 2256 mRNA 0.42 7 1575435 1582456

Neighbor

gene id symbol gene type direction distance location
XLOC_003127 mybl2b coding upstream 779 1551603 ~ 1574656 (+)
XLOC_003126 AL935272.1 coding upstream 29204 1546117 ~ 1546231 (+)
XLOC_003125 ift52 coding upstream 29420 1533097 ~ 1546015 (+)
XLOC_003124 srsf6b coding upstream 44570 1522127 ~ 1530865 (+)
XLOC_003123 acot8 coding upstream 54489 1512571 ~ 1520946 (+)
XLOC_003129 si:dkey-40c23.2 coding downstream 2291 1584747 ~ 1618087 (+)
XLOC_003130 lrp1aa coding downstream 46082 1628538 ~ 1864288 (+)
XLOC_003131 rbms2a coding downstream 285157 1867613 ~ 1920517 (+)
XLOC_003132 NA coding downstream 353228 1935684 ~ 1997410 (+)
XLOC_003133 NA coding downstream 369175 1951631 ~ 1952594 (+)
XLOC_003250 BX324177.11 misc downstream 9763347 11345803 ~ 11346099 (+)
XLOC_003255 BX324177.14 misc downstream 9790430 11372886 ~ 11373182 (+)
XLOC_003257 BX324177.13 misc downstream 9803906 11386362 ~ 11386658 (+)
XLOC_003260 BX324177.2 misc downstream 9835577 11418033 ~ 11418323 (+)
XLOC_003262 BX324177.15 misc downstream 9846937 11429393 ~ 11429689 (+)
XLOC_003118 FQ311892.1 non-coding upstream 844512 730807 ~ 730923 (+)
XLOC_003112 NA non-coding upstream 1031241 543348 ~ 544194 (+)
XLOC_003109 NA non-coding upstream 1070606 474380 ~ 504829 (+)
XLOC_003138 mir196c non-coding downstream 608165 2190621 ~ 2190730 (+)
XLOC_003139 NA non-coding downstream 616074 2198530 ~ 2205798 (+)
XLOC_003140 NA non-coding downstream 725753 2308209 ~ 2320355 (+)

Expression


Co-expression Network