G1225517


Basic Information

Item Value
gene id G1225517
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20258534 ~ 20260813 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398822
ACAAAACAGGAAAGCAACTATTTTAATTCTCCGCTCCAACTGAAGTTCAACAAGTTAACATCATCTCAACATTCTTCATCAGATTTAGACAGGCTTGGTTGAGGGGAATACTAGTGCAACAAAAAAAGGCACAAAACCACATCTTGGGGGCAAAATTAACCAGAGGTCTTATGTATTGGTACAGAACAGAATAACAAGCCTGATAATATAACCATCATCCTTGGTCAAACACAATGCATTTCACTGGTTTATTAAAAACTCAGGTTGTTCATTTACCTGCTCTGAAATGCAGAGGTCCGGAAATAAGTTTCCTTTCTGTCCAAGCTTTGGTCATAAAATAATTTGTGCTAGAATATGTAAATTATTATACTTTCTATTATGAGGCCTGGGCAGTGTTCAGAAGGACACACCGTAGCAACTGTTTGCAACAAAAAAAGGTTATTGTTCAGGCAGTACCTCCCCGTTTCACTAAGTTTCAAAACGCCCTACCTACTGAACATGATCCAGGTAGTAAACGCCTTTAGAGGAAAAGGCTATAAGGACACTCCTAACAGCAAACCAACATCACATTTAGTTTAGTCTATTGCAGAGTCCCTATAGCCTCCGTCTTAACAGAGCCATTTGTGATACACGACCGGAGTCTATACCGCTGTCTTCCTTAACCTGAGAGGGGACTTCTTAACATTATATTTTCTCTAAAACATCAAAATCACATGTTTATGCAACTGCTCCAAATGCTGGTTGGTACGCGTCTTTGTAAAGTTAGTCCTAGTACAATAAAGGGACACTAAGAGAAGATTAGTGCAGGTGGTATAATAACATTCAAAATACAGGGAATTCACAAAAATAGGATATTTTCTAATTCTACAAATATTTAACAATGGTTACTTATGAATAGCAATGCCTCAATTTGTATCTATGAACTTTCAACAAATTCTTTGCACAATTTCAAGTCCCTATTTATCCAAAATCAACATAATTAATTCTATACAAGAGAGTAATTAATtagaaacatagaaatataatgcaACACAAAACAGTGAGAACAAACAGCCTCATTCATATGAGCCTCTCTGGGAATAAAGAAACTGATGGACTGTTATTAAGATGACCCATGATACTTCACTCTGTGCAATTTACATCCACACACACCTGGTGCAATACCACTGATTATGTTGACAGGTTTTGATGGTAAATGATTTCAGTCATTgttggtgtaaaaaaaaaatagcaacAGACGGTCAACTTTCAAAATGACTGTTGGGTGGGGTGATACTTCGGGTGGGAGTCTGAACAGGGAATTAATTTGCTGGGGGTAACGTCAAGGAAAGATACATTTTTTCCTTCCATTTTCAATCGGATGCCATAGAAGCTTTGGGGATGGGGAGCCAACGTGTTGTGACGGGCTTGGGTGGGGGAGGATGGGAAGGAATGGGTAGAGGCAGAAGCAGCTGGGATTGGTTggattatacagactggtagccGGTGCGACTCTTCCTCCGGCCAATCAGGTAAGAGATAAGCACAAGGATGATTAGGAAGCAGAGGGCCACGCCCACAGCAATGGGCACCAGAAAGCTCAAATCAGAGTCCATGAAGCACTCCACGGCTGccacagaagagacagaagaaggGTTAGCGACATTAGCATGCTAGCAATTAGTTAGCAGAAAACACATTTTAGTGAAGAGAGAAGAAACAGGATTTGGTTAAGCTCTTCACAGACAACATGGGTGACAAGGCTCGAAAAGCAGCAAGACATCAGATCAGAACCCAGACATTCATCTACAACATGGGGGCGGTTCTGTCAGAGCATATTCGGTGAAGGCAGATCTACAACAACACCGGGGATTCTGTCAGAACATGGGCAGTGACAGCAGTTAGGAAAATATTTGGCCATCATCTGCAATCTATAGTCAACCATGTTATAAGTAAGGAATAAGAGTCAGCCAATCAATTCTAAATATATCTACAAGAACTGTTACATGCCAAATGTTATCAATGGAGCCGAGCAATTTCTTTAACACAAACATCTTCTCCAACTCATTGTTTCATGGGAAAGAGCTTTGCTTCAGGTGAATTGTACATTAAGGTTAACTATGCACAGCACATATCAATTTGTAGTCAACATGTATCCTGATGAGGAAAGATACAACCTCAGCATAGccagtggggtcatttagaagTGCTCATAGCTAGAGCCTTGGTTTCTCTTTCTCCCAATAAAATATGCGATCAATACAATGAGGATCAGCACAGCCAGAGCAACCCCGACGGCTA

Function

NR:

description
PREDICTED: lysosome-associated membrane glycoprotein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398822 True 2280 lncRNA 0.40 1 20258534 20260813

Neighbor

gene id symbol gene type direction distance location
mcts1 tma20 coding downstream 43026 20206253 ~ 20215508 (-)
LOC110488962 LOC106604433 coding downstream 93472 20135091 ~ 20165062 (-)
LOC118938705 NA coding downstream 128280 20115525 ~ 20130254 (-)
LOC110488960 LOC106604553 coding downstream 297834 19948368 ~ 19960700 (-)
LOC110488958 trpc3 coding downstream 412625 19789786 ~ 19845909 (-)
LOC110488967 LOC106604437 coding upstream 5171 20265984 ~ 20273649 (-)
zbtb33 LOC106604440 coding upstream 43561 20304374 ~ 20308443 (-)
ndufa1 LOC106611562 coding upstream 54816 20315512 ~ 20316866 (-)
sowahd LOC106604443 coding upstream 65913 20325473 ~ 20331673 (-)
LOC110488978 ube2a coding upstream 120091 20380904 ~ 20386061 (-)
G1225512 NA non-coding downstream 19447 20237512 ~ 20239087 (-)
G1225571 NA non-coding downstream 21748 20236543 ~ 20236786 (-)
G1225567 NA non-coding downstream 29010 20229014 ~ 20229524 (-)
G1225565 LOC106604435 non-coding downstream 32205 20225700 ~ 20226329 (-)
G1225564 NA non-coding downstream 32916 20225394 ~ 20225618 (-)
G1225575 NA non-coding upstream 14184 20274997 ~ 20275272 (-)
G1225576 NA non-coding upstream 15216 20276029 ~ 20276271 (-)
G1225514 NA non-coding upstream 16720 20277533 ~ 20308964 (-)
G1225582 NA non-coding upstream 26026 20286839 ~ 20287609 (-)
G1225584 LOC106604438 non-coding upstream 29009 20289822 ~ 20290999 (-)
G1225499 NA other downstream 124481 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 422215 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 2859299 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4940374 15317793 ~ 15318160 (-)
G1218808 NA other downstream 5264155 14993820 ~ 14994379 (-)
G1225505 upf3b other upstream 60965 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 204917 20465730 ~ 20470523 (-)
G1225875 NA other upstream 462224 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1967506 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3609145 23869958 ~ 23873564 (-)

Expression


Co-expression Network