G1225584 (LOC106604438)


Basic Information

Item Value
gene id G1225584
gene name LOC106604438
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20289822 ~ 20290999 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398894
TCCTTGAAGCCTCCCAGCACGGCGGCGGTGATGATGCCCAGGAAAAGAGCGATGATGTTGAGGATGGTGACGGACCACAGCAGGTGATAAAGGTGTACCACATCCTCACAGCTCCCCACCTCCGTGTACTCGTGGTAGCCCCCCATCAGCTCCACACGGCTGGGCTTGCCACAGTTGTAGAGGTCACAGCAGTAGCAAGTATTAGATTTCACACGTAGGTTACAGGTTGCACGGGATGCTGTCTGGCAGTGAACCTAGATTTCACACAGGTAGTCACTGTTATCACACAGTAAAGCATATGGATCATGCTCTCTATATTGGGAAACTGATGGATTTTCAACTCTAAGGCAATGTTTAAACCACTTTAAGGCAACTTTTTAACTTTAAGGCAACATATAAACAACTTCAAGGCAACCTTTCAACAAAGTGGTGATATGAG
>TU1398893
TCCTTGAAGCCTCCCAGCACGGCGGCGGTGATGATGCCCAGGAAAAGAGCGATGATGTTGAGGATGGTGACGGACCACAGCAGGTGATAAAGGTGTACCACATCCTCACAGCTCCCCACCTCCGTGTACTCGTGGTAGCCCCCCATCAGCTCCACACGGCTGGGCTTCCAAATCATGGACGTTTTCCTAAACTTTTTCAAAACATCTTTATTCGCATGTCCCA

Function

NR:

description
transmembrane protein 255A isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398894 False 439 lncRNA 0.47 2 20289822 20290999
TU1398893 True 223 lncRNA 0.53 2 20290341 20290999

Neighbor

gene id symbol gene type direction distance location
LOC110488967 LOC106604437 coding downstream 16173 20265984 ~ 20273649 (-)
mcts1 tma20 coding downstream 74314 20206253 ~ 20215508 (-)
LOC110488962 LOC106604433 coding downstream 124760 20135091 ~ 20165062 (-)
LOC118938705 NA coding downstream 159568 20115525 ~ 20130254 (-)
LOC110488960 LOC106604553 coding downstream 329122 19948368 ~ 19960700 (-)
zbtb33 LOC106604440 coding upstream 13375 20304374 ~ 20308443 (-)
ndufa1 LOC106611562 coding upstream 24630 20315512 ~ 20316866 (-)
sowahd LOC106604443 coding upstream 35727 20325473 ~ 20331673 (-)
LOC110488978 ube2a coding upstream 89905 20380904 ~ 20386061 (-)
tnmd LOC106604450 coding upstream 185208 20476207 ~ 20564889 (-)
G1225582 NA non-coding downstream 2213 20286839 ~ 20287609 (-)
G1225576 NA non-coding downstream 13551 20276029 ~ 20276271 (-)
G1225575 NA non-coding downstream 14550 20274997 ~ 20275272 (-)
G1225517 NA non-coding downstream 29009 20258534 ~ 20260813 (-)
G1225512 NA non-coding downstream 50735 20237512 ~ 20239087 (-)
G1225589 NA non-coding upstream 9614 20300613 ~ 20303793 (-)
G1225615 NA non-coding upstream 99723 20390722 ~ 20391285 (-)
G1225726 NA non-coding upstream 307466 20598465 ~ 20598774 (-)
G1225499 NA other downstream 155769 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 453503 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 2890587 17395671 ~ 17399280 (-)
G1219208 NA other downstream 4971662 15317793 ~ 15318160 (-)
G1218808 NA other downstream 5295443 14993820 ~ 14994379 (-)
G1225505 upf3b other upstream 30779 20321778 ~ 20325219 (-)
G1225647 LOC106604448 other upstream 174731 20465730 ~ 20470523 (-)
G1225875 NA other upstream 432038 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1937320 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3578959 23869958 ~ 23873564 (-)

Expression


Co-expression Network