G1225505 (upf3b)


Basic Information

Item Value
gene id G1225505
gene name upf3b
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20321778 ~ 20325219 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398810
gcGGTCATTTGTCATTGTTTAGCAAGGCTACATCAATTATGAAAGAAACACAAAATGTTTATTCCAATTAGAATTTTGTTAACCATACAGTAGCATTGTTTACGTATGAAGATGCATATATGTATGACGGGGAAGGCCACAAGTTAAGGTTAATAGTCACCCATTGGGGTTCCATGTAGTCTCAAATCAAGGCATAGCTCAGTTTAATATGTTCAATTAAATGGCTATTTCATTCTCCCGAATCGGTGAAATAACATAACTTAATATTGTATTATTGTTTTGTTACCTGTAGACTATTTCTGTTGCTTATTTAAAAAACTAGATATCAGTCTTGTATACGTGTTTGGTTTTGTCCCCATGACACTGTAGACGCGGATGCCTATTTCACTCCCTCAATATCCCCAGAATGAATCTAACATACCTTAAATTAATAACAGATTTTCAGAGTTTTTGCCGAGGATGTTTTAGTTGCGCGATTTTACATCTAAGGTGTTTGGTAGTATTTCTCAAGtttaaaaaactaacaaaatCCACAAGGTGTTGTCTTACGTAAACAACGTCGGCGGTGCTGGGCAGGTCTGATTCACTGTCGATGCTATTGGATAAAGCGCAATCACTGCAGCTGTTCACCCCATGCTAGTGGGCAAATGGTCATCGTCAAATCAAAACACAAACCTTAATTTAACCGTTGTGACGCACGGATGTTCCAAATTCCGTTatagacgagactgactttatgaccaaatgTATCCAATTTACACTTTGtccattttgacactagaataacagtttgactcatatcgatgccacattgGCCATCTTCAAAgggatttgttgctttttaaaggcAGTCGCTCCTTAAATGTACAGAGTATAAACCTAAAATATGCCTAAAAGTTAACAAAATAGATTTTAATAGATGCAACAGGATATCTTTAAATCAGTAATCTCCTATACTGTTCCGAAAGTAGAGAATGTTCTATTTTATGTGATAAAAAGAGAATACACAACCAATCAGGGTGAAAGCCTATTCAATATAAGAACCGTGCTTTGCAACTGTGTAGCACAGACTGTGTACCAATACTGTAGTAAGGTCACTTAAAATTCATGTGGTCCTAGAAAGCTTTGGCTTTGTCTCGTTGTACCCTATAATCAAACTCTCACAAACATTAAAAGGAAGTGCTAATTTTCCCTTGATTTTCTTCAGAAACAAAACTAAGAGGGGCACATTCAGGCACTGAGGGGGGCACCATGGTCACATCCCTGCCTCTGGTTGTGAGTGGGAGGATGGGATGTGGCTCTGCAAGATTATCATTGTAGGCGCCTCTCTGGCACCAGTTTGCTTGGCTCAGAGcaaatctctccccctctcctcactcgTTTTATCATTCTTTATTTGTGGTCATTTTTTTATCATTCATCTCCCTTCTCTTGGGATCGCTTGCTCTCACTCTCTGACTTTCTCTCCCCAGCATGAgattctcctcctccaccacctcgaGCTCCTCGGTTCCTAGCACCTGGCTGGTAAAGCTGAATGGCAGGCCGATCCTTGTTTCTTAAACGATCTCTTTTAGCTTTCTCCTCCCTCAGGGTTTCTTCTGACTTTTTAGGCTTATCGGTATGGCTTGAAGTATGGCTTACAGAGTCTCCTGCATTCTCGCCCTTTCTCTTTTCCCAGACACGATCTCCTTTCTCCTTTTTCCCTTCGTCCTCTCGCTTTCTGTACGAGTTCTCTCCGTCGTGCCGTTCCCTTCTCCTTCGTCGATCCTCATCCTGTCGTCTGATGCGCTCCTTCTCTTTCTGCCGCcgttccctctccctgtctcgtTCGCGATCCCTGTATCTTTCTATGTCTCGCTCTCTGAAGTCTTTGTGTCCATCTCTATGTCCCTCTTTGTGTCCATCTTCTTCAGCTTTCCGTGATCCCCTATCCTCCCTGCTTTCATGGTTTTGGCGCTTCTTCATATCAGAACCCCCTGGAGCTCTGTCGTCTTTCATCTTGTCCTTCTCAGGTTTCTTTGACTTCTCTTTAGGCTTTTCCACATCCACGTCATCTCCCCGGTCTGGTTTTCTCAGGAGCTTGATTTTTGGCTCCTCCTTTGCCTGGTCTTTATCTTTCTCTGCAGTTTTGTCCCCTTTCTTAAACTTCTCGGCTTCTTTGcgcttcctcctgtcctcctccctccacttccgACGTTCCTCATCCCGCTGGCGCTTCCGTTCTAGCtctcgtctcctcctctcctctttcttttcctcACGGATTCTCTGTTTGTTCTTCAAGAAGTCCAAGA

Function

symbol description
upf3b Predicted to enable mRNA binding activity. Predicted to be involved in nuclear-transcribed mRNA catabolic process, nonsense-mediated decay and positive regulation of translation. Predicted to be located in nucleus. Predicted to be active in cytoplasm and nucleolus. Human ortholog(s) of this gene implicated in non-syndromic X-linked intellectual disability 82 and syndromic X-linked intellectual disability 14. Orthologous to human UPF3B (UPF3B regulator of nonsense mediated mRNA decay).

NR:

description
regulator of nonsense transcripts 3B

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398810 True 2297 TUCP 0.43 5 20321778 20325219

Neighbor

gene id symbol gene type direction distance location
ndufa1 LOC106611562 coding downstream 5164 20315512 ~ 20316866 (-)
zbtb33 LOC106604440 coding downstream 13335 20304374 ~ 20308443 (-)
LOC110488967 LOC106604437 coding downstream 48129 20265984 ~ 20273649 (-)
mcts1 tma20 coding downstream 106270 20206253 ~ 20215508 (-)
LOC110488962 LOC106604433 coding downstream 156716 20135091 ~ 20165062 (-)
sowahd LOC106604443 coding upstream 1507 20325473 ~ 20331673 (-)
LOC110488978 ube2a coding upstream 55685 20380904 ~ 20386061 (-)
tnmd LOC106604450 coding upstream 150988 20476207 ~ 20564889 (-)
trnaa-ugc-63 NA coding upstream 382326 20707545 ~ 20707619 (-)
diaph2 LOC106604453 coding upstream 940908 21266127 ~ 21960003 (-)
G1225514 NA non-coding downstream 12814 20277533 ~ 20308964 (-)
G1225589 NA non-coding downstream 17985 20300613 ~ 20303793 (-)
G1225584 LOC106604438 non-coding downstream 30779 20289822 ~ 20290999 (-)
G1225582 NA non-coding downstream 34169 20286839 ~ 20287609 (-)
G1225615 NA non-coding upstream 65503 20390722 ~ 20391285 (-)
G1225726 NA non-coding upstream 273246 20598465 ~ 20598774 (-)
G1225750 NA non-coding upstream 299307 20624526 ~ 20624775 (-)
G1225754 NA non-coding upstream 303271 20628490 ~ 20628741 (-)
G1225499 NA other downstream 187725 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 485459 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 2922543 17395671 ~ 17399280 (-)
G1219208 NA other downstream 5003618 15317793 ~ 15318160 (-)
G1218808 NA other downstream 5327399 14993820 ~ 14994379 (-)
G1225647 LOC106604448 other upstream 140511 20465730 ~ 20470523 (-)
G1225875 NA other upstream 397818 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1903100 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3544739 23869958 ~ 23873564 (-)
LOC110489025 LOC106604425 other upstream 4231514 24556733 ~ 24561862 (-)

Expression


Co-expression Network