G1225647 (LOC106604448)


Basic Information

Item Value
gene id G1225647
gene name LOC106604448
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 20465730 ~ 20470523 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1398964
tgttttattattAAAAAGGTCCATTGCAGTCGTTTtcatctcaacatcaaatcatttctgggtaacatttaagtaccttactgggattgttttcaattacaatggtcaaaaagaaatagaaagagattcttagcaaagagcaatttctcaagcaataattttgataggactgtctgggagtgtcctgaatggggaggggaaaactgaaaactagctgttattggcagagaggattGGAACTCTtgcttattggtctattaactaatttactgtcTGGTGATGTTATCAGGCAGGCCGAAACTCTATCCCACCATaacaggcagaaatttcaggtggtcttttcaaacacctcttacactaaaagggcattatcatcattttcaaaatttcacagtattattccaaccacatagtgtggaaatatatataaaacacaggaaaataacgctttgactgcactgggcctaaATATTCTttcttaaaaaaaatctaatctagTTTCAGCATAGGAGGAAACCACAGAAAACCCAAGACAAAGGAAAACGTAATGATCGGACAGACAGCGCGGACAGACGCCAACATCTCACATACAACAGTGCTTAAAAAGGAAAATACCTGTATATACAACATAAGCGTCTGTAAGCAGGAAAATCCAGTCAACCCCACCCACAGAGTTCATTGCAGTCAATTATCAACACCAAAGACTGTTTTGGTACTTTTTGTAACCCTAGAGAGCATTGATTGTCACAACTTTTCATAACTTTGTACTGTACAACATTCAGATTGTCAACACAGAGAGCCCTTTGGTTGACATAAGACTGATGCCTGGGCACAAGTTCTAAAAAGTAGCATAACCTAAAGTAGCATAACCTAATGAAGCAGGCGTAAAATAAATGCCTGAGCGACGTTTCTTTCTGGACCTGTTGAGGAGGGAAAAAATGaCACAAATCCGTAAAtgtggaggagttaagatggagtgtcaCCGTGTTAATGTCCAAAAGCGGAAGTCACGTCCCAGACTCTCCATTTCTCCTGAAATTAGCATTAAAGCTTGTCCTCAGATGCTGAGCAAGAGTTCAGATGGTCTGTTGCTCACTCCAGCTCAAGTGAAAAAAATACAAGTAATTTAGCCATGGTAGCGCTCAAGATAAATATTGGTTTACTTACACTAGCATCTGCAGGCTATCATGGCCATTCAGAGACCTTGACGTCTCAGGTCCCTAACAAAACTGGGACACCCAATAAAAAGAGCACAGACACCAGTCTGACCAAAGACCAAGAGCTAGGAGCGGAGCACCAGAATTGTAAATGCATAGAAGTAGGGAGGAAAACACCAGTGTTGAGTCACAATTTGCGTCACAAAATAGGAGAGGTCACAGAGGACCTGATTGAGACCAAATTACCAAATTAACTGGACAGGGGTGTGTGAATCTATCCAACTGATCTCTACTGCTTGACTGTTGAATAAGGCTAGAGGTTGTGTCCGCTGTACAAAGGGAAGAAGAACCAAAGCACATACAACACAATGTTTAAATGACACAGGACAGAGATGTTTATAGAGACCATCATTTGCGTCGGGGCAAACCACTTTGAGTCCAAAACAGAGGAAGTATCATCATCAATGCTGCGCTGATTATAAGGAATGCTTAAAAAAAACATATCAGCTTTTTGGAAAAAAAATTCACCGACAAATGAGCTTCCTGTTATTTGATTTCATATACTTTGTATATTATCCCTCGTGTTTTCCATATGTAAATAACAAACAAATGTGCCTTTTTATACAGAATTTAGAAATtcacaaaataaatacatttgtggCCTTAAATTGAATCTCAATAGTATATTATtactttatatatatttatatatattccaTTTCATATAAACAGGATTAAAGGCCTTAATGGGAAGATAGGAGGCTAGtaaaatctattttatttttCCTCCgtattttctctcgctctctctctctctctctccctgcatcaaGTCTGCAGCTATATACAAACAGGTTTGTGATTGGACTGTCCAAGGGGACAGGAAATGCCCATTTCCATAGTAACACATTGCTGTAAGGCGATGAGTAATGGAGGGGAAAGCACACCTTATCGACAACTTATAATATGGGGGATATGGAGGAAACTCCGGATAAGTCACAATCGTTTGAGTCAAAACAATCTGAACCGTCATTTTCCCCCCCTCAGACTTTTCCAGTCAAGAGTTTGAACTGTTTTACCTTTACGTATAAGGCACTCTTCCATTAAAGGTCAGTAAGGTGCGTTTCCGTCATTCTTCCTTAAAAAAAAAGTGGAGACGGCATGTAGAAATGACACATTTTCTGCTCATCAAGTCTGATTTCATTGCATTCTCCCACACGAGTTCCCATCTCCTGTTTTTGGTTTGCTGTTTTTGTCTGTTAGCATTGACACAAGTCTGATGAGATGTACTGGTAGGTAGAACATTTACTAATCTAACTGGCACATGTGGTGGGGTAGATCCCTGGTTATCCAATGGCTGTTCTCCTGGCGGGGACAGGTTTGGGAAGGGGGCGGGTTTACTGACAGTAgcaaggtaggtaggtagattgaTCCGAGTGAGGGCCTTTCGAACTATGGAGCcttcaacaacacatcacaaAACAATCCCTTGATGTTGAAATTTGGGCACGGGATCACAACAGTGAGTAAGCAAAAACATCCTGCGGGGGCCAACGTTTGGTCTCTGTCGCTCCACATTTAAAAATCCATCGCTTTTCAAAATAAGATTATCAACGGGATAAGAACAAGGAAACTTTGTTAAAAAGCAATTGCACCatttttcaacctcatattcattatctccagcaccataccagtgtctacatatgtgaaaacagcgtgtttctatgatctgtggttaaaaagataaGAAGAAAGGTCCTAAATGTGTTAACTTTTGATGATGTTGGGTAGAACTTTTTAACTTTATATATGTTTCGACAAAACGTACAAATgcgccattttcacatatgtagacaatggtattgtgctggagacaatgaaaatgaggttgaaaagtggtggaattgccctttGGGTAGTCTTTCTTTATGTTGATTTCATAGTCCAACTTTGATGGAGAGTCCAGGCCTAttagcaggttggcatttattgtcattaatcttgccctggaggcagctctgcagagtgggcACTAGCTGGAACAGCCACAAAGTcgtaaaatcagattttaaacctaaccttaacctgatgGACTACAGTTATCCATTGGATGGTTCTCCATAGGTGACAGTTTTATTTctcatcactgcatcctgtatcaaaaggttgtCTGGTCCTCATTAACGTCCCATATATCACTTCATTACTCCCGTATTGTTTACAAAGCTCTACTACACAAGCTTCCAACTTATCTCACTTCgttgttagttgttgttagtATAAAACATGATATAAAGTATAAAATCAGGAGATACCAAACTCTTGAGGTTCCTTGTGGTCTCCACAGAACTAAGTAAATCCTCTTTTAGTTTTAATACACCTCATTGCTGGAACCAattttacaatacattacaattgGATGTTGTACTGCCGCTCAGGCAATTGCAAATACTAATTGGTAAACTTCTTACTAATGAATGTAAGAATATTTGTGTTGTGCTGTATTTTAGTTTGTTTTACATTGTATCTGATTTCAATTCAATTTTGTCTTATGAATAGTATGTGCATGGCTCCCTTGTGAAAGAAACCCTGGTCTCAATGGTGACTCCCTGttcaaataaaggtaaaataaaaaacctaatcttaaccacactgctaatcctaatgcctaaccctaaattAAGATCAAAAAGCTCATTTTTGTCTTTCTTAATTTTTACGATAGAGACAATTTTGACTTTTCAGCTGGACCATCTAGTGGaaatcactcagttctgcctccaggacaagactcgtGACAATAAAGGTCAGCTTATGGTCTACTAGACCTCTGTGGGTTCTGCCTTGATCTGGATGAAGGAGGCTGGGAGGTGGACAGTGATCTCTGGCAGCTCCTGGAGCCCCTTGACCCCCACCATGTGCTCCGGTTGCAGGGCCATCTCCCCGCGCACCTCTAGCTCCTCCACGGGGGTCAGGCCCTCACTGGGGCTGCTTCCCTGGGAAAAGTATCCGTTCACTGGAGACTCGCTTCCAGTCTCCCCCTGGTTCGGTCCAAGGCTTTGGTTCTTCCCAATGATCACAGTCCTGTAGGTGAGCTCTGCTTCCCctgcctccatctcctccttGCCAAACGACGGGTCTCCATTAACCAATGACTGCAGGTAGTAGGGGTCCAGCATCTCCTCCTTGATGCCGTGCAGGCCATGGAGGAGCTCGCCACCGCTGGAGGACTTGAGGACCGTAGCAATGACGGTCCCCGGCTGCTGGGCCACCATGGTCTGACCGGTGGCCGTGTTGAGAGTGACCATGCGGGGAAGGCCGTTGAGGGAGGCAGTGGTGGAGCTGAGGACCCCTGTGGTGGTAGTGGAGCCCAGGCTGGTGACAAGGAACTGGGGGTGCTGGTGGTGATCCTGGAGGCTGCCCATCCCAGTGGCCAGGGAGGCCGTCTGGATGGTGAGGACATCCTTGCCCCCCGCCGTGGTAGAAGGGACGGTGTGGAGGATGACCCTGGGCTGGGAGGAGTGGCTGGACGAGTCACCGTTGGACAGGAGGGGCTGCAGCTGGCCAGAAGACGTCAGGACCATGGGGACGGAGTTAGGCATGTTGAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1398964 True 4768 TUCP 0.43 2 20465730 20470523

Neighbor

gene id symbol gene type direction distance location
LOC110488978 ube2a coding downstream 79669 20380904 ~ 20386061 (-)
sowahd LOC106604443 coding downstream 134358 20325473 ~ 20331673 (-)
ndufa1 LOC106611562 coding downstream 149116 20315512 ~ 20316866 (-)
zbtb33 LOC106604440 coding downstream 157287 20304374 ~ 20308443 (-)
LOC110488967 LOC106604437 coding downstream 192081 20265984 ~ 20273649 (-)
tnmd LOC106604450 coding upstream 5684 20476207 ~ 20564889 (-)
trnaa-ugc-63 NA coding upstream 237022 20707545 ~ 20707619 (-)
diaph2 LOC106604453 coding upstream 795604 21266127 ~ 21960003 (-)
LOC118938706 NA coding upstream 1212192 21682715 ~ 21684822 (-)
trnat-ugu-36 NA coding upstream 1342662 21813185 ~ 21813258 (-)
G1225615 NA non-coding downstream 74445 20390722 ~ 20391285 (-)
G1225514 NA non-coding downstream 156766 20277533 ~ 20308964 (-)
G1225726 NA non-coding upstream 127942 20598465 ~ 20598774 (-)
G1225750 NA non-coding upstream 154003 20624526 ~ 20624775 (-)
G1225754 NA non-coding upstream 157967 20628490 ~ 20628741 (-)
G1225800 NA non-coding upstream 174998 20645521 ~ 20645807 (-)
G1225958 NA non-coding upstream 319993 20790516 ~ 20790737 (-)
G1225505 upf3b other downstream 140511 20321778 ~ 20325219 (-)
G1225499 NA other downstream 331677 20133711 ~ 20134053 (-)
G1225043 LOC108238713 other downstream 629411 19835878 ~ 19836319 (-)
asb5a LOC101464329 other downstream 3066495 17395671 ~ 17399280 (-)
G1219208 NA other downstream 5147570 15317793 ~ 15318160 (-)
G1225875 NA other upstream 252514 20723037 ~ 20723236 (-)
LOC110488986 LOC106604455 other upstream 1757796 22228319 ~ 22233369 (-)
G1229693 znf518b other upstream 3399435 23869958 ~ 23873564 (-)
LOC110489025 LOC106604425 other upstream 4086210 24556733 ~ 24561862 (-)
LOC110489477 LOC106604496 other upstream 4237438 24706395 ~ 24709307 (-)

Expression


Co-expression Network