XLOC_031282 (si:dkey-58f10.4)


Basic Information

Item Value
gene id XLOC_031282
gene name si:dkey-58f10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38771779 ~ 38777852 (-)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00060738
ACGCATGCAGAGCGACGACACCGTTGCTCATACCTGTACCGGACCAGTTTCAAAGTTCTGTGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCTTGCCCAGATGAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTAGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGATGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACTCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTCAAAGACCATGTCCAAAGTCTTCCTTCCGATTCATGACACAAAAACTTCtgagttagttaattagttgccGCTCAGAGGTTCTGTTTCTTTGCTTCATCACTTTTGTTCAATGGACAGTTTGACTTGGAACAATGTGGTAGTCACGCACCGACTTCTTCAGTTCCTGGATAAGTCTGCAGCAAATATGGGCATttgatttgcttttgtatatatgggcaaagtttgttttgttatgtCAAATGCTGAGATCAGaggcactttattttttttatttcaatgtcGTAGTACATATGAAAATGTACTGTACTGTGCACTAAAGCTAGTCTGTTTATGTAAATTGCTCAGGTCAAGATTCACTGTATTTTATTGTTAGTGTACACAGATAGCATTTAAAGGTCTTCTATGCTGCGCTTAAAGATGAGGTTAGTTTCTgtaatttttaatgttaaaatgtttacaacattaacaataaaatcgaTTATAGAAACTTTTGATTATAAATTGATTATAAGTGCACCCAGTTGTTTGTATATGGCAAATGTTATAGAGTAATAAACATTTGACAAAT
>TCONS_00062053
GAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTAGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGTAAGGCAAACATGGTAACAATGTGGCTGATGCATGTTTATGCAATTAGTACTTTATTTACTCATCTTGCCTAATAGGTGAATAGTGCAAAACAAAGTCATTAATTTTAagggtaaatataaaaaaagcgtgtgtgtgtgtgtctctgtgtctgtgtatatgtatgtgcatatatatatatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagttgaACTCTGTTGAATAGGTTGTACAGAACCACACTGATAATGACATTTTACGTTTGTAGTTATATTGCCTgcaatattcagtttttttattattcacttaCCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGATGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGCAAGTATTGTTTAAAAAGCATAGTTTGACTTTTTTGGGAAAGGCACTCATTCCTCAGATGTCTGACTGAGTTATAGTACAAAGCTGGAGCCCTGTCAAATGATCAAAACATGCCTACAAACACATAAATGAATATGCAGGAACCAGGGTCCCAAGTTAACCTTTTGGACTTTTAGTTGCTTGTagacttgatttaaaaaataatgtcatttttaactgcagtttcacaaaaGTAAAATCCTTGTTTtacattatgcaaaaatcataatCATCTGACAATATAACTGTCAGAATGGCATTTTCAGTTTTGCCACTTATTGTTCTGTTTATTCTCATACAGGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACTCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTC
>TCONS_00060739
TGGAGTTTTTGAGGGCTTTATACAACGTGCAACACATAGAAGATGTCAGAAGCATAAATGACATGATGGCTAGGACATATAGCTGGGGGAGAATGGAAGTGGTTGTCCAGAGCCCAGATGTGCAAAAATTAAAGAAAGATGGCTTGCCCAGGTAAATGATTTATCAATGACATGCTGCTCACTCTGTTTTTGTTTAAAGGCAAATAATGGTGAACAAAGATGTTTATGTGATGCTAGACACACTTTTTGCTGAACACATACTGAAAATGTTACCTCACATGTTTTATGGAGGATTTCATTACATAGGAATAAAAGGTTGCCAATTCTTTACACATTTGGTTCCAAATAACAGACAAACAATTGATGTTTTACAGATGAATGAAGAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTAGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGATGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACTCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTC

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000094820

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00060738 False 1220 mRNA 0.40 6 38771779 38777852
TCONS_00062053 False 1140 lncRNA 0.37 1 38772347 38773486
TCONS_00060739 True 815 lncRNA 0.41 5 38772347 38777792

Neighbor

gene id symbol gene type direction distance location
XLOC_031281 BX640512.4 coding downstream 9365 38732861 ~ 38762414 (-)
XLOC_031279 BX640512.3 coding downstream 60273 38686046 ~ 38711506 (-)
XLOC_031280 BX640512.1 coding downstream 65948 38697496 ~ 38705831 (-)
XLOC_031278 si:ch211-271e10.1 coding downstream 126426 38641933 ~ 38645353 (-)
XLOC_031276 NA coding downstream 138060 38614868 ~ 38633719 (-)
XLOC_031283 cnot6l coding upstream 8629 38786481 ~ 38824466 (-)
XLOC_031284 NA coding upstream 12880 38790732 ~ 38791845 (-)
XLOC_031285 BX640512.5 coding upstream 20352 38798204 ~ 38798318 (-)
XLOC_031286 BX571800.1 coding upstream 114770 38892622 ~ 38892759 (-)
XLOC_031287 BX571800.2 coding upstream 251959 39029811 ~ 39029925 (-)
XLOC_031277 NA non-coding downstream 148808 38620957 ~ 38622971 (-)
XLOC_031269 NA non-coding downstream 516035 38250044 ~ 38255744 (-)
XLOC_031259 BX640520.1 non-coding downstream 733562 38035337 ~ 38038217 (-)
XLOC_031288 NA non-coding upstream 264202 39042054 ~ 39045354 (-)

Expression


Co-expression Network