G1227852 (mars2)


Basic Information

Item Value
gene id G1227852
gene name mars2
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048578.1
NCBI id CM023232.3
chromosome length 43310081
location 22263147 ~ 22263728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1401288
AAACCTGGAGTTGAACCCCTGTAGAATCTTGTATCTGTGCAGGAAGTCAGCAGTAACAGCCGAGTACAAGTGTCCAATATGAGGGGCAGCGTTCACATAGAAGATAGGGGTGGTGATATAATAGTTCCGGTCTTCTGTCGGAATATCAGTGCACAGGCGTCTCACCATGAGCCTTTTGCAATTCCAGAATGATGGGGATGGAGAAAGTGCACATCTTGTAGCATGGCTGAATGACCATCTCTGTGCAACCTTACAGTTTCTGATAATGGAGAGGTACGTCTTCATCATGGGACAATAGGCAACTGTTGACAGCGTCCACAAACTATGACTGTGAGGTTATGACGGACCATATGACAAACGTTACCAACTCAGCGTTGATATTGCGGTCCATTGTAAATGGCAACAGTGATATCCTCACCCGGTGTTAATTCATTTCTAAAAGCCCATGAGTTGTAGAGAAAAGTAACGACACCAGAAATGTCAAAACAGTTTAGTATTTTGAGTAATCCTGGTAATTGTttgtttttatataaatataattcCGTAGAGGACTCCACTTTACATATCTTTATGAAACCCACG

Function

symbol description
mars2 Predicted to enable ATP binding activity and methionine-tRNA ligase activity. Predicted to act upstream of or within methionyl-tRNA aminoacylation. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 25 and spastic ataxia 3. Orthologous to human MARS2 (methionyl-tRNA synthetase 2, mitochondrial).

NR:

description
methionine--tRNA ligase, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1401288 True 582 lncRNA 0.42 1 22263147 22263728

Neighbor

gene id symbol gene type direction distance location
zgc:101583 LOC106604457 coding downstream 2134 22256452 ~ 22261013 (-)
LOC110488986 LOC106604455 coding downstream 29778 22228319 ~ 22233369 (-)
LOC118938775 NA coding downstream 33226 22229785 ~ 22229921 (-)
trnat-ugu-36 NA coding downstream 449889 21813185 ~ 21813258 (-)
LOC118938706 NA coding downstream 578325 21682715 ~ 21684822 (-)
med12 LOC106604460 coding upstream 20701 22284429 ~ 22335359 (-)
wu:fb13g09 LOC106604461 coding upstream 78047 22341775 ~ 22393750 (-)
LOC110488996 LOC106604462 coding upstream 154888 22418616 ~ 22728487 (-)
LOC110488997 NA coding upstream 485159 22748887 ~ 22786969 (-)
LOC110488999 LOC106604467 coding upstream 1010705 23274433 ~ 23313885 (-)
G1227851 NA non-coding downstream 159 22262723 ~ 22262988 (-)
G1227835 NA non-coding downstream 44983 22217951 ~ 22218164 (-)
G1227832 NA non-coding downstream 47826 22215025 ~ 22215321 (-)
G1227830 NA non-coding downstream 49872 22213071 ~ 22213275 (-)
G1227562 NA non-coding downstream 200865 22062009 ~ 22062282 (-)
G1227853 NA non-coding upstream 2918 22266646 ~ 22266971 (-)
G1227854 NA non-coding upstream 3473 22267201 ~ 22267854 (-)
G1227856 NA non-coding upstream 5340 22269068 ~ 22269311 (-)
G1227859 mars2 non-coding upstream 8150 22271878 ~ 22272194 (-)
G1227860 mars2 non-coding upstream 8897 22272625 ~ 22273964 (-)
G1225875 NA other downstream 1539911 20723037 ~ 20723236 (-)
G1225647 LOC106604448 other downstream 1792624 20465730 ~ 20470523 (-)
G1225505 upf3b other downstream 1937928 20321778 ~ 20325219 (-)
G1225499 NA other downstream 2129094 20133711 ~ 20134053 (-)
G1229693 znf518b other upstream 1606230 23869958 ~ 23873564 (-)
LOC110489025 LOC106604425 other upstream 2293005 24556733 ~ 24561862 (-)
LOC110489477 LOC106604496 other upstream 2444233 24706395 ~ 24709307 (-)
G1232240 NA other upstream 3839618 26103346 ~ 26165403 (-)
kcnk4a LOC106604391 other upstream 4716982 26979968 ~ 26990318 (-)

Expression


Co-expression Network